View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9446_low_25 (Length: 241)
Name: NF9446_low_25
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_low_25 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 23623875 - 23624104
Alignment:
| Q |
18 |
actacaggctttagcacaaggagtgccaaaaagcttagataagactaaagttcatgatacattgtacgaagccacaaaggcaaaacaagcacggaaagga |
117 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23623875 |
actacaggctttagcacaaggcgtgccaaaaaacttagataagactaaagttcatgatacattgtacgaagccacaaaggcaaaacaagcacggaaagga |
23623974 |
T |
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| Q |
118 |
aaggaaaaggtt------nnnnnnntactaaatttaagcaatttaaagggttccgccttcacaattaataatcaaaatcgaaagtaacatatgccgactt |
211 |
Q |
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| T |
23623975 |
aaggaaaaggttaaaaaaaaaaaaaaactaaatttaagcaatttaaagggttccgccttcacaattaataatcaaaatcgaacgtaacatatgccgactt |
23624074 |
T |
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| Q |
212 |
caaccttcaaaaagactgaagcttcacctt |
241 |
Q |
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||||| |||||||||||||||||||||||| |
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| T |
23624075 |
caaccatcaaaaagactgaagcttcacctt |
23624104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 20995135 - 20995344
Alignment:
| Q |
25 |
gctttagcacaaggagtgccaaaaagcttagataagactaaagttcatgatacattgtacgaagccacaaaggcaaaacaagcacggaaaggaaaggaaa |
124 |
Q |
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| T |
20995135 |
gctttagcacaaggagtgctaaaaagcctagataagatcaaagttcaagatacaccgtacaaagccacaaaggcaaag-aagcaccaaaaggaaagaaac |
20995233 |
T |
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| Q |
125 |
aggttnnnnnnntactaaatttaagcaatttaaagggttccgccttcacaattaataatcaaaatcgaaagtaacatatgccgacttcaaccttcaaaaa |
224 |
Q |
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| T |
20995234 |
aagctaaaca---attgtatttaagcaatgtaaagggttccgcctctacaattgataatcaaaatcgaaagtaacatattacaacttcaaccactaaaaa |
20995330 |
T |
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| Q |
225 |
gactgaagcttcac |
238 |
Q |
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| T |
20995331 |
gactgaagcttcac |
20995344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 1067734 - 1067635
Alignment:
| Q |
142 |
aatttaagcaatttaaagggttccgccttcacaattaataatcaaaatcgaaagtaacatatgccgacttcaaccttcaaaaagactgaagcttcacctt |
241 |
Q |
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||||||||||| |||| | ||||||| ||||||| |||||||||| ||||||||||||| ||||||||||| | |||||| ||||||||||||| |
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| T |
1067734 |
aatttaagcaaactaaacgagtccgcctccacaattggtaatcaaaatggaaagtaacatatttcgacttcaaccactagaaagaccgaagcttcacctt |
1067635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 9880459 - 9880391
Alignment:
| Q |
171 |
cacaattaataatcaaaatcgaaagtaacatatgccgacttcaaccttcaaaaagactgaagcttcacc |
239 |
Q |
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| T |
9880459 |
cacaattgataatcaaaatcgaaagtaacgtatttcgatttcaaccaccaaaatgactgaagcttcacc |
9880391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 16862530 - 16862474
Alignment:
| Q |
183 |
tcaaaatcgaaagtaacatatgccgacttcaaccttcaaaaagactgaagcttcacc |
239 |
Q |
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| T |
16862530 |
tcaaaatcgaaagtagcgtattttgacttcaaccaccaaaaagactgaagcttcacc |
16862474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 24452904 - 24452969
Alignment:
| Q |
174 |
aattaataatcaaaatcgaaagtaacatatgccgacttcaaccttcaaaaagactgaagcttcacc |
239 |
Q |
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|||| ||||||||||||||||||||||||| ||| ||||||| ||||| |||| |||||||||| |
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| T |
24452904 |
aattgataatcaaaatcgaaagtaacatatttcgatttcaaccaccaaaaggacttaagcttcacc |
24452969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 38057735 - 38057803
Alignment:
| Q |
171 |
cacaattaataatcaaaatcgaaagtaacatatgccgacttcaaccttcaaaaagactgaagcttcacc |
239 |
Q |
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||||||| ||||||||||||||||||||| ||| ||| ||||||| ||||| ||||||| ||||||| |
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| T |
38057735 |
cacaattgataatcaaaatcgaaagtaacgtatttcgatttcaaccaccaaaatgactgaaacttcacc |
38057803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 534136 - 534190
Alignment:
| Q |
185 |
aaaatcgaaagtaacatatgccgacttcaaccttcaaaaagactgaagcttcacc |
239 |
Q |
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||||| ||||||||||||| ||||||||| | ||||||||||||||||||||| |
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| T |
534136 |
aaaatagaaagtaacatatttcgacttcaatcaccaaaaagactgaagcttcacc |
534190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 45050295 - 45050363
Alignment:
| Q |
171 |
cacaattaataatcaaaatcgaaagtaacatatgccgacttcaaccttcaaaaagactgaagcttcacc |
239 |
Q |
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||||||| ||||||||||||||| ||||||||| ||| |||| | ||||| ||||||||||||||| |
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| T |
45050295 |
cacaattgataatcaaaatcgaaggtaacatatttcgatttcagtcaccaaaaggactgaagcttcacc |
45050363 |
T |
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