View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9446_low_28 (Length: 237)
Name: NF9446_low_28
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8690268 - 8690050
Alignment:
| Q |
1 |
caaacaattatatattgaagatgaaactaacaattatatcaataattataaatagaattgtatatttatacacaatttaatatacatgtctatcgaaaat |
100 |
Q |
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| T |
8690268 |
caaacaattatatattgaagatgaaactaacaattatatcaataattataaatagaattgtatatttatacacaatttaatatacatgtctatcgaaaat |
8690169 |
T |
|
| Q |
101 |
catggattgcgctactagtaataaaaggaattctgtaaaaagttggcaaagctttgtaaaatcattaaccttaaattttggaattacactatgctcacag |
200 |
Q |
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| T |
8690168 |
catggattgcgctactagtaataaaaggaattctgtaaaaagttggcaaagctttgtaaaatcattaaccttaaattttggaattacactatgctcacag |
8690069 |
T |
|
| Q |
201 |
tgcgagcaaaggtcattgc |
219 |
Q |
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| T |
8690068 |
tgcgagcaaaggtcattgc |
8690050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 8729470 - 8729285
Alignment:
| Q |
5 |
caattatatattgaagatgaaactaacaattatatcaataattataaatagaattgtatatttatacacaatttaatatacatgtctatcgaaaatcatg |
104 |
Q |
| |
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||||||||||||||||||||||| || |||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
8729470 |
caattatatattgaagatgaaaccaataattatatca-taatcataaatagaagtgtatatttatacacaatttaatatacatgtctatctaaaattatg |
8729372 |
T |
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| Q |
105 |
gattgcgctactagta-------ataaaaggaattctgtaaaaagttggcaaagc-tttgtaaaatcattaaccttaaattttggaa |
183 |
Q |
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| T |
8729371 |
gattgtgctgcttatagtgtagcttaaaaggaattatgtaaaaagttagtgaagcttttgtaaaatcattaatcttaaattttggaa |
8729285 |
T |
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