View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9446_low_31 (Length: 213)
Name: NF9446_low_31
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 21073395 - 21073576
Alignment:
| Q |
20 |
cagaacggccgtccccggattcaactcaccgtgaagttgaaccaccgcgtccgaccaaaagaaaatcagatcaccactctgaacctgaacacgatggcat |
119 |
Q |
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| T |
21073395 |
cagaacggccgtccccggattcaactcaccgtgaagttgaaccaccgcgtccgaccaaaagaaaatcagatcaccactctgaacctgaacacgatggcat |
21073494 |
T |
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| Q |
120 |
agcttgtaagtatgaccaccacgactgtcaccaggatcgcaactacgagcacgaatgccaccagcatcgccgtcatcaccacc |
202 |
Q |
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| T |
21073495 |
agc-tgtaagtatgaccaccacgaccgtcaccaggatcgcgactacgagcacgaatgccaccagtatcgccgtcatcaccacc |
21073576 |
T |
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Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 41569112 - 41569291
Alignment:
| Q |
20 |
cagaacggccgtccccggattcaactcaccgtgaagttgaaccaccgcgtccgaccaaaagaaaatcagatcaccactctgaacctgaacacgatggcat |
119 |
Q |
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|||||||||| || || |||||| | |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| ||| | || |
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| T |
41569112 |
cagaacggccatcgccagattcatcccaccgtgaagttgaaccaccgcgtccaaccaaaagaaaatcagat---cactctgaacgcgaacgcgaagacag |
41569208 |
T |
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| Q |
120 |
agcttgtaagtatgaccaccacgactgtcaccaggatcgcaactacgagcacgaatgccaccagcatcgccgtcatcaccacc |
202 |
Q |
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|| | | | || ||| |||| ||| |||||||||||||| ||||||||||||| | |||||||| |||||||||||||||| |
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| T |
41569209 |
agatcgagactacgactaccatgaccgtcaccaggatcgcgactacgagcacgaccgtcaccagcaccgccgtcatcaccacc |
41569291 |
T |
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