View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9446_low_35 (Length: 212)
Name: NF9446_low_35
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 35306526 - 35306693
Alignment:
| Q |
23 |
gtcccaattcatataattgataatgctcaaaggttcatgaacnnnnnnntcgaatttaataaaattggttgaaatgatgatataatcaaagagattgtaa |
122 |
Q |
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| T |
35306526 |
gtcccaattcatataattgataatgctcaaaggttcatgaactaaaaaatcgaatttaataaaattggttgaa---atggtataatcaatgagattgtaa |
35306622 |
T |
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| Q |
123 |
gacaacaaacataaaaaactgaaaaagaagaaatacgagcacagcataaataacactaagcagaagcagaataatc |
198 |
Q |
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| T |
35306623 |
gacaacaaacat-aaaaactgaaaaagaagaaatacgagcacagc----ataacactaagcagaagcagaataatc |
35306693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 35231577 - 35231738
Alignment:
| Q |
23 |
gtcccaattcatataattgataatgctcaaaggttcatgaacnnnnnnntcgaatttaataaaattggttgaaatgatgatataatcaaagagattgtaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||||||||| |
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| T |
35231577 |
gtcccaattcatataattgataatgctcaaaggttcatgaacaaaaaaatcgaatttaataaaattggttgaa---atggtataatcaatgagattgtaa |
35231673 |
T |
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| Q |
123 |
gacaacaaacataaaaaactgaaaaagaagaaatacgagcacagcataaataacactaagcagaagcaga |
192 |
Q |
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| T |
35231674 |
gacaacaaacat-aaaaactgaaaaagaagaaatacgagcacagc----ataacactaagcagaagcaga |
35231738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 16597448 - 16597584
Alignment:
| Q |
27 |
caattcatataattgataatgctcaaaggttca-tgaacnnnnnnntcgaatttaataaaattggttgaaatgatgatataatcaaagagattgtaagac |
125 |
Q |
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|||||||||||||||||||| |||||||||| | |||| |||||||||| |||||||||| ||||||| | |||||| ||||||| ||||| |
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| T |
16597448 |
caattcatataattgataatactcaaaggtttaatgaa-aaaaaattcgaatttaacaaaattggtttaaatgat---acaatcaacgagattgcaagac |
16597543 |
T |
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| Q |
126 |
aacaaacataaaaaactgaaaaagaagaaatacgagcacagc |
167 |
Q |
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| T |
16597544 |
aacaaacat-aaaaactgaacaagaagaaatatgtgcacagc |
16597584 |
T |
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