View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9446_low_4 (Length: 475)
Name: NF9446_low_4
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 76 - 469
Target Start/End: Original strand, 36363159 - 36363551
Alignment:
| Q |
76 |
catagattattgttacttgttttcatgcagaatgctaatattgttttcatttcttttattaattgttacagatggtagttccattggagtgaactatggt |
175 |
Q |
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| T |
36363159 |
catagattattgttacttgttttcatgcataatgctaatattgttttcatttcttt-attaattgttacagatggcagttccattggagtgaactatggt |
36363257 |
T |
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| Q |
176 |
cgcatagcaaacaacctaccctcagcattcaaagtagtcaagcttctaaaatcacaaggaatcgaccgggtcaaactctacgacaccgacccggctgttc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36363258 |
cgcatagcaaacaacctaccctcagcattcaaagtagtcaagcttctaaaatcacaaggaatcgaccgggtcaaactctacgacaccgacccggctgttc |
36363357 |
T |
|
| Q |
276 |
tcaaatccttatccggatccggaatcaaagtaaccgtaaacctcccaaacgaacaactctttcacacagccagaaaactctcctacgccctcacatggct |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36363358 |
tcaaatccttatccggatccggaatcaaagtaaccgtaaacctcccaaacgaacaactctttcacacagccagaaaactctcctacgccctcacatggct |
36363457 |
T |
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| Q |
376 |
ccnnnnnnncgtcgtcgtttaccaccccaaaacccaaatcgaagccatcgccgtcggcaacgaagtcttcgtcgacacacacaacaccaccaaa |
469 |
Q |
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| T |
36363458 |
ccaaaaaaacgtcgtcgtttaccaccccaaaacccaaatcgaagccatcgccgtcggcaacgaagtcttcgtcgacacacacaacaccaccaaa |
36363551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 36986758 - 36986658
Alignment:
| Q |
167 |
aactatggtcgcatagcaaacaacctaccctcagcattcaaagtagtcaagcttctaaaatcacaaggaatcgaccgggtcaaactctacgacaccgacc |
266 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||| | || || ||||||||||| || || |||||| |||||||||| |||| |
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| T |
36986758 |
aactacggtcgcatagcaaacaacctaccctcagcaaccaaagtagttcaactcctcaaatcacaaggtataacccatgtcaaaatctacgacacagacc |
36986659 |
T |
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| Q |
267 |
c |
267 |
Q |
| |
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| |
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|
| T |
36986658 |
c |
36986658 |
T |
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