View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9446_low_9 (Length: 278)

Name: NF9446_low_9
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9446_low_9
NF9446_low_9
[»] chr8 (4 HSPs)
chr8 (1-192)||(12587193-12587393)
chr8 (89-192)||(27323205-27323308)
chr8 (75-190)||(35036079-35036198)
chr8 (44-93)||(27324409-27324458)
[»] chr1 (1 HSPs)
chr1 (1-192)||(21880191-21880391)
[»] chr7 (1 HSPs)
chr7 (1-192)||(22970234-22970434)
[»] chr3 (1 HSPs)
chr3 (1-192)||(49602743-49602943)
[»] chr6 (2 HSPs)
chr6 (45-192)||(6901002-6901149)
chr6 (1-43)||(6900761-6900803)
[»] chr2 (1 HSPs)
chr2 (42-190)||(22329701-22329848)
[»] chr5 (1 HSPs)
chr5 (42-187)||(35360367-35360511)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 12587393 - 12587193
Alignment:
Q  1 ctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagttaacatctattattaccttgttg 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  12587393 ctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctattattaccttgttg 12587294  T
Q  92 atattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttattg 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12587293 atattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactactattttattg 12587194  T
Q  192 c 192  Q
    |    
T  12587193 c 12587193  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 27323308 - 27323205
Alignment:
Q  89 ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctatttta 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  |||||||||| |||||| |||||| ||| |||||||    
T  27323308 ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgacaaatgattatttaggattattcaataatcttgaactttgctgttatttta 27323209  T
Q  189 ttgc 192  Q
    ||||    
T  27323208 ttgc 27323205  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 35036079 - 35036198
Alignment:
Q  75 ctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttga----taagtgattatttgagattattcaacaatctta 170  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |    |||||| || |||| ||||||||||| ||| |     
T  35036079 ctattattactttgttgatattgaatttatgttgatagtgtaaactttattgttagggtttaataattaagtgtttttttgggattattcaacgatcatg 35036178  T
Q  171 aactttactgctattttatt 190  Q
    |||||| |  ||||||||||    
T  35036179 aactttgccactattttatt 35036198  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 27324458 - 27324409
Alignment:
Q  44 atttgtttattattgtaatgagagttaacatctattattaccttgttgat 93  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27324458 atttgtttattattgtaatgagagttaacatctattatcaccttgttgat 27324409  T

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Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 21880391 - 21880191
Alignment:
Q  1 ctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagttaacatctattattaccttgttg 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  21880391 ctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctattattaccttgttg 21880292  T
Q  92 atattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttattg 191  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  21880291 atattgaatttatgttgattgtgtaaaatttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttactactattttattg 21880192  T
Q  192 c 192  Q
    |    
T  21880191 c 21880191  T

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Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 22970234 - 22970434
Alignment:
Q  1 ctaagaggtacactctcttccttatttttatgattttaaacttatttg---------tttattattgtaatgagagttaacatctattattaccttgttg 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  22970234 ctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctattattaccttgttg 22970333  T
Q  92 atattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttattg 191  Q
    ||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22970334 atattgaatttatgttgattgtaaaaaatttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactactattttattg 22970433  T
Q  192 c 192  Q
    |    
T  22970434 c 22970434  T

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Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 49602943 - 49602743
Alignment:
Q  1 ctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagttaacatctattattaccttgttg 91  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  49602943 ctaagaggtacactctcttccttatttatatgattttaaacttatttgttttgtttgtttattattgtaatgagagttaacatctattattaccttgttg 49602844  T
Q  92 atattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttattg 191  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||    
T  49602843 atattgaatttatgttgattgtacaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactctactactattttattg 49602744  T
Q  192 c 192  Q
    |    
T  49602743 c 49602743  T

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Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 45 - 192
Target Start/End: Original strand, 6901002 - 6901149
Alignment:
Q  45 tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901002 tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga 6901101  T
Q  145 ttatttgagattattcaacaatcttaaactttactgctattttattgc 192  Q
    ||||||  |||||||||||||| |||||||||||| ||||||||||||    
T  6901102 ttatttaggattattcaacaatattaaactttactactattttattgc 6901149  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6900761 - 6900803
Alignment:
Q  1 ctaagaggtacactctcttccttatttttatgattttaaactt 43  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  6900761 ctaagaggtgcactctcttccttatttttatgattttaaactt 6900803  T

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Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 22329848 - 22329701
Alignment:
Q  42 ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag 141  Q
    |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22329848 ttatttgtttgttattgtaatgagagttaacatctattattaagttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag 22329749  T
Q  142 tgattatttgagattattcaacaatcttaaactttactgctattttatt 190  Q
    |||||||||| |||||||  |||||||| || ||| |||||||||||||    
T  22329748 tgattatttgggattatt-tacaatcttgaattttgctgctattttatt 22329701  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 35360511 - 35360367
Alignment:
Q  42 ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag 141  Q
    ||||||||| ||||  |||| | |||||||  | |||||||||||||  |||||| || || ||||||| |||  ||||||||||||||||||| || ||    
T  35360511 ttatttgttaattacagtaacgtgagttaatttatattattaccttgccgatattaaacttttgttgatagtgataactttattgttagggtttaat-ag 35360413  T
Q  142 tgattatttgagattattcaacaatcttaaactttactgctatttt 187  Q
    || |||||||  ||||||||||||| ||||||||| ||| ||||||    
T  35360412 tgtttatttggaattattcaacaattttaaactttgctgttatttt 35360367  T

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