View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9447_high_1 (Length: 873)
Name: NF9447_high_1
Description: NF9447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9447_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 618; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 19 - 652
Target Start/End: Original strand, 32158091 - 32158724
Alignment:
| Q |
19 |
agtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaac |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158091 |
agtaaaccatctaagacgaaaacggggattagtagttcccttgacaggaatcaaatagcaggtaacattgatgttgaactcagctgctaatacttgcaac |
32158190 |
T |
|
| Q |
119 |
cattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagtaaaagcatccacctgtgtaataacattagcat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158191 |
cattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagtaaaagcatccacctgtgtaataacattagcat |
32158290 |
T |
|
| Q |
219 |
tattaactatatttcatcaacaataactaagttcagattcaaacaaaataaactcaccacatagtatttcactggtttctctgacattggcatattatat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158291 |
tattaactatatttcatcaacaataactaagttcagattcaaacaaaataaactcaccacatagtatttcactggtttctctgacattggcatattatat |
32158390 |
T |
|
| Q |
319 |
gaacaggtgttagttagtgctatataaaatggaatgtcaaactcaaagtttttatttcataatatgaacacaacctactccaacatgttccaaagtatat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158391 |
gaacaggtgttagttagtgctatataaaatggaatgtcaaactcaaagttgttatttcataatatgaacacaacctactccaacatgttccaaagtatat |
32158490 |
T |
|
| Q |
419 |
acagacactgatgtagtaatgtttgtcttgtatgattttaaaaagattctttatgtttcctcgtggccagtttggcaataacattgccggtagttttgga |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32158491 |
acagacactgatgtagtaatgtttgtcttgtatgattttaaaaagattctttatgtttcctcgtggccagtttggcaataacattgccggtagttttgga |
32158590 |
T |
|
| Q |
519 |
catgggcacacattctcctgtatgtcgtgttacgtctctgtcccaagattgtaccttcttcttgaacaacattgtgggagtaaatatggttaaaaggtgt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158591 |
catgggcacacattctcctgtatgtcgtgttacgtctctgtcccaagattgtaccttcttcttgaacaacattgtgggagtaaatatggttaaaaggtgt |
32158690 |
T |
|
| Q |
619 |
gttatttgaacgatcatttacatgacaacttacg |
652 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
32158691 |
gttatttgaacgatcatttgcatgacaacttacg |
32158724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 735 - 863
Target Start/End: Original strand, 32158807 - 32158935
Alignment:
| Q |
735 |
ttatcacaaattaaatgtacaaatattatttctctatttttaacttaaacaagggaattatttatttgtttgacttatgagtacagtagtgtgccctacc |
834 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
32158807 |
ttatcacagattaaatgtacaaatattatttctctacttttaacttaaacaagggaattatttatttgtttgacttatgagtacagaagtgtgccctacc |
32158906 |
T |
|
| Q |
835 |
ctctggctttgcctcaagctctctgctcc |
863 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
32158907 |
ctctggctttgcctcaagctctctgctcc |
32158935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 32168993 - 32169148
Alignment:
| Q |
19 |
agtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaac |
118 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||| |||||| | | |||| |||||||||| || || ||||||||| ||||| |||| || ||||||| |
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| T |
32168993 |
agtaaaccatctaagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttcagagatgttgaattcagcagctactaattgcaac |
32169092 |
T |
|
| Q |
119 |
cattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
174 |
Q |
| |
|
||||||||||| || |||| |||| |||||||||||||| || ||||| ||||| |
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|
| T |
32169093 |
cattcatcatctttatcttcttctagtaaacacactgctgctggattccctttgaa |
32169148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 27325118 - 27325273
Alignment:
| Q |
19 |
agtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaac |
118 |
Q |
| |
|
|||||||||||| |||| |||||| ||| ||| |||||| | | |||| |||||||||| || | || ||||| ||||| |||||| |||||||| |
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| T |
27325118 |
agtaaaccatctgagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcagctaatgcttgcaac |
27325217 |
T |
|
| Q |
119 |
cattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
174 |
Q |
| |
|
||||||||||| || |||| ||||| |||||||||||||| || ||||| ||||| |
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|
| T |
27325218 |
cattcatcatctttatcttcttctaagaaacacactgctgctggattccctttgaa |
27325273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 27358252 - 27358142
Alignment:
| Q |
92 |
ttgaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagtaaaag |
191 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||| || |||| ||||| ||||| |||||||| || ||||| ||||| || |||||| || | |
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|
| T |
27358252 |
ttgaactcagaagctaatgcttgcaaccattcatcatctttatcttcttctaataaacatactgctgctggattccctttgaatgctgtctcagtgaatg |
27358153 |
T |
|
| Q |
192 |
catccacctgt |
202 |
Q |
| |
|
||||||||||| |
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|
| T |
27358152 |
catccacctgt |
27358142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 27350221 - 27350303
Alignment:
| Q |
92 |
ttgaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
174 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||||| || |||| ||||| |||||||||||||| || ||||| ||||| |
|
|
| T |
27350221 |
ttgaattcagcagctaatgattgcaaccattcatcatctttatcttcttctaagaaacacactgctgctggattccctttgaa |
27350303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 32165202 - 32165357
Alignment:
| Q |
19 |
agtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaac |
118 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||| |||||| | | || | ||| |||||| || | ||||||||| ||||| |||| | ||||||| |
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|
| T |
32165202 |
agtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttccgagatgttgaattcagcagctactgattgcaac |
32165301 |
T |
|
| Q |
119 |
cattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
174 |
Q |
| |
|
||||||||||| || |||| ||||| |||||||| ||||| || ||||| ||||| |
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|
| T |
32165302 |
cattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaa |
32165357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 44288314 - 44288205
Alignment:
| Q |
92 |
ttgaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagtaaaag |
191 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
44288314 |
ttgaactcagctgctaatgcttgcaaccattcatcatccctctcttcttctaacaaacacactgctgcagggtttcccttgaacgctgactcagtgaaag |
44288215 |
T |
|
| Q |
192 |
catccacctg |
201 |
Q |
| |
|
|||||||||| |
|
|
| T |
44288214 |
catccacctg |
44288205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 735 - 777
Target Start/End: Complemental strand, 6884943 - 6884901
Alignment:
| Q |
735 |
ttatcacaaattaaatgtacaaatattatttctctatttttaa |
777 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
6884943 |
ttatcacaaattagttgtacaaatatcatttctctatttttaa |
6884901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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