View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9447_high_5 (Length: 280)
Name: NF9447_high_5
Description: NF9447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9447_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 34823601 - 34823361
Alignment:
| Q |
30 |
tctatatgattcaaataaaagtaattccaaaataaagtaacgcatttattgtaatctactgtattcagattacattatcaaactacataaaacaattata |
129 |
Q |
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| T |
34823601 |
tctatatgattcaaataaaagtaattccaaaataaagtaacgcatttattgtaatctactgtattcagattacattatcaaattacataaaacaattata |
34823502 |
T |
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| Q |
130 |
tatcttgacttatatttaagaaatgagacgattgtgcgac-nnnnnnnnaagcaaaagaagatgaaataaaaaacaattctagcatagaatagaaaaagg |
228 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34823501 |
tatcttgacttatatttaagaaatgagatgattgtgcgactttttttttaagcaaaagaagatgaaataaaaaa-aattctagcatagaatagaaaaagg |
34823403 |
T |
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| Q |
229 |
gatttacctcgtaaattttgttatcacctaattggacctatg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
34823402 |
gatttacctcgtaaattttgttatcacctaattggacctatg |
34823361 |
T |
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