View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9447_low_16 (Length: 247)
Name: NF9447_low_16
Description: NF9447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9447_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 28639911 - 28639692
Alignment:
| Q |
14 |
agacaaaattggtggtgtactcttactttaaacattaagcattaccccttctaatcaatgatgacattatatgctttggttgttaatatccatat--ttc |
111 |
Q |
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| T |
28639911 |
agacaaaattggtggtgtactcttactttaaacattaagcattaccccttctaatcaatgatggcattatatgctttggttgttaatatccatatatttc |
28639812 |
T |
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| Q |
112 |
aattaattttttcggttcttaagttatagttagaggtcatctgtacttagaattatctgtccttgatgacttgttaatgataacaaacttgcagtgatat |
211 |
Q |
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| T |
28639811 |
aattaattttttcggttcttaagttatagttagaggtcatctgtacttagaattatctgtccttgatgacttgctaatgataacaaacttgcagtgatat |
28639712 |
T |
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| Q |
212 |
tgtgaatgaatacacaaaag |
231 |
Q |
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| T |
28639711 |
tgtgaatgaatacacaaaag |
28639692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 28649214 - 28648999
Alignment:
| Q |
14 |
agacaaaattggtggtgtactcttactttaaacattaagca----ttaccccttctaatcaatgatgacattatatgctttggttgttaatatccatatt |
109 |
Q |
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| T |
28649214 |
agacaaatttggtggtatactcttacttttaacattaagcaagcattaaccattctaatcaatgataaca--atattctttggttgttaatatccttatt |
28649117 |
T |
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| Q |
110 |
tcaattaattttttcggttcttaagttatagttagaggtcatctg-tacttagaattatctgtccttgatgacttgttaatgataacaaacttgcagtga |
208 |
Q |
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| T |
28649116 |
tccattaattttttcggttgct----tatagctagagc-caccacctacttagaattatctgtccttgatgacttgctaatgataacaaacttgcagtga |
28649022 |
T |
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| Q |
209 |
tattgtgaatgaatacacaaaag |
231 |
Q |
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| T |
28649021 |
tattgtgaatgaatacacaaaag |
28648999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 28674519 - 28674462
Alignment:
| Q |
174 |
ttgatgacttgttaatgataacaaacttgcagtgatattgtgaatgaatacacaaaag |
231 |
Q |
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| T |
28674519 |
ttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaag |
28674462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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