View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9447_low_25 (Length: 204)
Name: NF9447_low_25
Description: NF9447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9447_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 32158091 - 32158259
Alignment:
| Q |
19 |
agtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaac |
118 |
Q |
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| T |
32158091 |
agtaaaccatctaagacgaaaacggggattagtagttcccttgacaggaatcaaatagcaggtaacattgatgttgaactcagctgctaatacttgcaac |
32158190 |
T |
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| Q |
119 |
cattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagta |
187 |
Q |
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| T |
32158191 |
cattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagta |
32158259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 32168993 - 32169148
Alignment:
| Q |
19 |
agtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaac |
118 |
Q |
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| T |
32168993 |
agtaaaccatctaagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttcagagatgttgaattcagcagctactaattgcaac |
32169092 |
T |
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| Q |
119 |
cattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
174 |
Q |
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| T |
32169093 |
cattcatcatctttatcttcttctagtaaacacactgctgctggattccctttgaa |
32169148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 27325118 - 27325273
Alignment:
| Q |
19 |
agtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaac |
118 |
Q |
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|||||||||||| |||| |||||| ||| ||| |||||| | | |||| |||||||||| || | || ||||| ||||| |||||| |||||||| |
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| T |
27325118 |
agtaaaccatctgagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcagctaatgcttgcaac |
27325217 |
T |
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| Q |
119 |
cattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
174 |
Q |
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||||||||||| || |||| ||||| |||||||||||||| || ||||| ||||| |
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| T |
27325218 |
cattcatcatctttatcttcttctaagaaacacactgctgctggattccctttgaa |
27325273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 27350221 - 27350303
Alignment:
| Q |
92 |
ttgaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
174 |
Q |
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||||| ||||| |||||| |||||||||||||||||| || |||| ||||| |||||||||||||| || ||||| ||||| |
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| T |
27350221 |
ttgaattcagcagctaatgattgcaaccattcatcatctttatcttcttctaagaaacacactgctgctggattccctttgaa |
27350303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 27358252 - 27358170
Alignment:
| Q |
92 |
ttgaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
174 |
Q |
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|||||||||| |||||| ||||||||||||||||||| || |||| ||||| ||||| |||||||| || ||||| ||||| |
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| T |
27358252 |
ttgaactcagaagctaatgcttgcaaccattcatcatctttatcttcttctaataaacatactgctgctggattccctttgaa |
27358170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 32165202 - 32165357
Alignment:
| Q |
19 |
agtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaac |
118 |
Q |
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||||||||||||||||| |||||| ||| ||| |||||| | | || | ||| |||||| || | ||||||||| ||||| |||| | ||||||| |
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| T |
32165202 |
agtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttccgagatgttgaattcagcagctactgattgcaac |
32165301 |
T |
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| Q |
119 |
cattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaa |
174 |
Q |
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||||||||||| || |||| ||||| |||||||| ||||| || ||||| ||||| |
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| T |
32165302 |
cattcatcatctttatcttcttctaataaacacacagctgctggattccctttgaa |
32165357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 44288314 - 44288220
Alignment:
| Q |
92 |
ttgaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccccttgaacgccaactcagt |
186 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
44288314 |
ttgaactcagctgctaatgcttgcaaccattcatcatccctctcttcttctaacaaacacactgctgcagggtttcccttgaacgctgactcagt |
44288220 |
T |
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