View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9447_low_6 (Length: 512)
Name: NF9447_low_6
Description: NF9447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9447_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 44349741 - 44349252
Alignment:
| Q |
1 |
tggagtgcggctagcatgtgccaaatatgctgtgtatggtgtagattatgaaggacatggacaatctgaaggtgttcgttgttacattaagaagttcaat |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44349741 |
tggagtacggctagcatgtgccaaatatgctgtgtatggtgtagattatgaaggacatggacaatctgaaggtgttcgttgttacattaagaagttcaat |
44349642 |
T |
|
| Q |
101 |
aacattgttaatgactgttatgactttttcaagtcagttagtggtatggattcaaagcctttgtctaatcctttgagtgtatacatttttaatcaattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
44349641 |
aacattgttaatgactgttatgactttttcaagtcagttagtggtatggattcaaagcctttgtctaatcttttgagtgtatacatttt-aatcaattct |
44349543 |
T |
|
| Q |
201 |
attattttcatcattcattttcatgttaattaattccagtgcttcaagagtacaagggaaaagctaggttcttgtatggagagtccatgggtggagcagt |
300 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44349542 |
att---ttcatcattcattttcatgttaatt----ccagtgcttcaagagtacatgggaaaagctaggttcttgtatggagagtccatgggtggagcagt |
44349450 |
T |
|
| Q |
301 |
tagtctacttttgcatcaaaaggacccttctttttgggatggtgccgttcttgtcgcacccatgtgtaaggtacacattgtaaataagtatttacactaa |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44349449 |
tagtctacttttgcatcaaaaggatccttctttttgggatggtgccgttcttgtcgcacccatgtgtaaggtacacattgtaaaaaagtatttacactaa |
44349350 |
T |
|
| Q |
401 |
caatgtatatgaattaaatttatgtttttaatgattcaatgattataatgtattgacagggtatagaattttttacattagaattaaatccatatact |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44349349 |
caatgtatatgaattaaatttatgtttttaatgattcaatgattataatgtattgacagggtatagaattttttacattagaattaaatccatatact |
44349252 |
T |
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