View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9447_low_7 (Length: 389)
Name: NF9447_low_7
Description: NF9447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9447_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 42168854 - 42168508
Alignment:
| Q |
19 |
tgattgtcaaacaaagaagcgacacgtggctactatattttgtgtctatcttagtgccgcagtggaaaaagggaagtttggtgcaacgattatttatgac |
118 |
Q |
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| T |
42168854 |
tgattatcaaacaaagaagcgacacgtggctgctatattttgtgtctatcttagtgccgcagtggaaaaagggaagtttggtgcaacgattatttatgac |
42168755 |
T |
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| Q |
119 |
ctcggaactaactatctatcatattcatcatgtgattccaaggacctttgattgatgattctaaggatattccattttggggtccgattcatgcatggtg |
218 |
Q |
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| T |
42168754 |
ctcggaactaactatctatcatattcatcatgtgattccaaggacctt----tgatgattctaaggatattccattttggggtccgatt----catggtg |
42168663 |
T |
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| Q |
219 |
gatatagtatcagtactttactcaatttaagtggtccatctttttacacaacttttttcatttaagtaaatccatggcttattacctatggtggagtatt |
318 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42168662 |
gatatagtattggtactttactcaatttaagtggtccatcttttttcacaacttttttcatttaagtaactccatggcttattacctatggtggagtatt |
42168563 |
T |
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| Q |
319 |
aaattaatagagcaatgtaatacaaacgtaattgattcatgtactaagatatttc |
373 |
Q |
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| T |
42168562 |
aaattaatagagcaatgtaatacaaacgtaattcattcatgtactaagatatttc |
42168508 |
T |
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