View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9447_low_9 (Length: 338)
Name: NF9447_low_9
Description: NF9447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9447_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 39979159 - 39979488
Alignment:
| Q |
1 |
gcactcactctcgctctccctttgtgtcttaacctgagtacttgtgtggcaaagtgtgtttggggagtatctttttatagccaaaatactaagacctgat |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979159 |
gcactcactctcactctccctttgtgtcttaacctgagtacttgtgtggcaaagtgtgtttggggagtatctttttatagccaaaatactaagacctgat |
39979258 |
T |
|
| Q |
101 |
aggtgaggaggtagttgagcatggtaaatgaaatttaatttctttgcagagcttgctagtcttgctgtcatcatatcagacacattactaccaaagacag |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979259 |
aggtgaggaggtagttgagcatggtaaatgatatttaatttctttgcagagcttgctagtcttgctgtcatcatatcagacacattactaccaaagacag |
39979358 |
T |
|
| Q |
201 |
tatatataaagtacnnnnnnnncttcaaactggcgtannnnnnnnatattaactctttgttctcga-cgaaaaaggaccatggtaatctgaaattcgact |
299 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||| |||| |
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| T |
39979359 |
tatatataaagtacttttttttcttcaaactggcgtattttttttatattaactctttgttctcaaccggaaaaggaccatggtaatctgaaatttgact |
39979458 |
T |
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| Q |
300 |
gtgtggtaagtaagattagtcaagaattat |
329 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
39979459 |
gtgtggtaagtaagtttagtcaagaattat |
39979488 |
T |
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