View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9448_high_2 (Length: 487)
Name: NF9448_high_2
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 37 - 418
Target Start/End: Original strand, 22385159 - 22385543
Alignment:
| Q |
37 |
aaataaagaaaatgtttgatctgtgtgtgtttttgtggtaaaatatttatgtattcatcaaagatccatttgaacaatgttttattatttcttattaagt |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22385159 |
aaataaagaaaatgtttgatctgtgtgtgtttttgtggtaaaaaatttatgtattcatcaaagatccatttgaacaatgttt-attatttcttattaagt |
22385257 |
T |
|
| Q |
137 |
ggnnnnnnnnnnnnnnnnnnnnnnnnngaatattgttgttataatctttaattgatttaatatgactgtgtatggataatgatgatctttatgtaacaat |
236 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22385258 |
ggttttttccagtgatttttgttttttgaatattgttgttataatctttaattgatttaatatgactgtgtatggataatgatgatctttatgtaacaat |
22385357 |
T |
|
| Q |
237 |
tgtggattttgtttgtttgtgaaaatcaactaacaatacttta----tttatttgattttatttttgtcacttttgaaaatattgaagggtatgtacctg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22385358 |
tgtggattttgtttgtttgtgaaaatcaactaacaatactttatttatttatttgattttatttttgtcacttttgaaaatattgaagggtatgtatctg |
22385457 |
T |
|
| Q |
333 |
cttcagattcaaacaggataacagtgtcttcaacatggggtgaatacttgttcttctaatgtccatttacatgtaagttttcaata |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22385458 |
cttcagattcaaacaggataacagtgtcttcaacatggggtgaatagttgttcttctaatgtccatttacatgtaagttttcaata |
22385543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University