View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9448_low_10 (Length: 407)
Name: NF9448_low_10
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 34546863 - 34547240
Alignment:
| Q |
16 |
acaacatcagcaacaagcttactatggcctgaatgtcttccatttgtgcaattcaagaccacctggtctgttccttcgtggataactttgattggtttca |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34546863 |
acaacatcaacaacaagcttactatggcctgaatgtcttccatttgtgcaattcaagaccacctggtctgttccttcgtggataactttgattggtttca |
34546962 |
T |
|
| Q |
116 |
acttcaacgccctcttcaatttcgtagatcactttatcaccatacctaacctcaggtactcgttcatactccaccacttcaaccctctcatggatcacag |
215 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
34546963 |
acatcaacgccctcttcaatttcgtagatcactttatcaccatacctaacctcaggtactcgttcatactccaccacttcaaccctctcacgaatcacag |
34547062 |
T |
|
| Q |
216 |
ggttgtggtggtggtgatggaggccaggggatctctcgatctcatcttcctcatagataaccctcttgttgaaggccatctcggcatttgggtagcgagg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34547063 |
ggttgtggtggtggtgatggaggccaggggatctctcgatatcatcttcctcatagataaccctcttgttgaaggccatctcggcatttgggtagcgagg |
34547162 |
T |
|
| Q |
316 |
gacgtcggtgagaatacttggctcccttctgacacctgaaatgtgggagaggtagtcctcggatctcaacatgatgtc |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34547163 |
gacgtcggtgagaatacttggctcccttctgacacctgaaatgtgggagaggtagtcctcggatctcaacatgatgtc |
34547240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 314
Target Start/End: Original strand, 34550301 - 34550479
Alignment:
| Q |
136 |
ttcgtagatcactttatcaccata---cctaacctcaggtactcgttcatactccaccacttcaaccctctcatggatcacagggttgtggtggtggtga |
232 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||| | |
|
|
| T |
34550301 |
ttcgtagatcacttgaccaccatagggcctaacctcaggtacacgttcatattccaccacttcaaccctctcaacgatctcagggttgtggtggtggcgt |
34550400 |
T |
|
| Q |
233 |
tggaggccaggggatctctcgatctcatcttcctcatagataaccctcttgttgaaggccatctcggcatttgggtagcgag |
314 |
Q |
| |
|
||| | |||| || ||| | |||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34550401 |
ccatggc---gcgatccttcaatcgcgtcttcctcgtagacaaccctcttgttgaaggccatctcaccatttgggtagcgag |
34550479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University