View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_11 (Length: 369)
Name: NF9448_low_11
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 32781865 - 32781715
Alignment:
| Q |
18 |
agaaattcagacttaattgtgatttttgaatttcatgagagtgttaatttttgctttattgttgatatatcgcattgagtggctcagtagtgatttttat |
117 |
Q |
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| T |
32781865 |
agaaattcagacttaattgtgatttttgaatttcatgagagtgttaatttttactttattgttgatatatcgcattgagtagctcagtagtgatttttgt |
32781766 |
T |
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| Q |
118 |
gataagcggtgttaatttgcttgagttaattcttaaataattagtaaatta |
168 |
Q |
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| T |
32781765 |
gataagcggtgttaatttgcttgagttgattcttaaataattagtaaatta |
32781715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 32781610 - 32781524
Alignment:
| Q |
269 |
tttaagttccaagcttatctatcaagaggagcgactccatgtcctttggggaacggtctgaggtaatagtagaagccaaatgagagt |
355 |
Q |
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| T |
32781610 |
tttaagttccaagcttatctatcaagaggagcgactccatgttctttgggggacggtctgaggtaatagtagaagctaaatgagagt |
32781524 |
T |
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