View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_12 (Length: 360)
Name: NF9448_low_12
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 7555753 - 7555411
Alignment:
| Q |
1 |
caccccattagaaatgtagccccacattgctgaagtttctgaatctcatgtatgggaatgtattgtactcctgtgaagagacatacggtttaaccatctt |
100 |
Q |
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| T |
7555753 |
caccccattagaaatgtagccccacattgctgaagtttctgaatctcatgtatgggaatgtattgtactcctgtgaagagacatatggtttaaccatctt |
7555654 |
T |
|
| Q |
101 |
ataaatataggacacatagaataacaatatataatatgtatgcactatgtattattttagatgttttcttaagctttaccgcttccatgtccaacatata |
200 |
Q |
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| T |
7555653 |
ataaatataagacacatagaataacaatatataatatgtatgcactatgtattattttagatgttttcttaagctttaccgcttccatgtccaacatata |
7555554 |
T |
|
| Q |
201 |
taaaaagatcatgactttccaatgcagaaatcatttcctttacgtcgggtttagatcctgcctttccctgtaaagtaacatgac-aaataaagaagacat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
7555553 |
taaaaagatcatgactttccaatgcagaaatcatttcctttacgaccggtttagatcctgcctttccctgtaaagtaacaagacaaaaaaaagaagacat |
7555454 |
T |
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| Q |
300 |
aaatattcactagatttgtagataaaacagctagcaggaatac |
342 |
Q |
| |
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| T |
7555453 |
aaatattcactagatttgtagataaaacagctagcaggaatac |
7555411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 1140424 - 1140088
Alignment:
| Q |
1 |
caccccattagaaatgtagccccacattgctgaagtttctgaatctcatgtatgggaatgtattgtactcctgtgaagagacatacggtttaaccat-ct |
99 |
Q |
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| T |
1140424 |
caccccatcagaagtgtagcaccacattgcggtagtttctcaatctcacgcctggaaatgtactgtactcctgtgaagacacatacaattcaaccacact |
1140325 |
T |
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| Q |
100 |
tataaatataggac--acatagaataacaatatataatatgtatgcact-atgtattattttagatgttttcttaagctttaccgcttccatgtccaaca |
196 |
Q |
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||| |||||| ||| |||| |||| |||| ||||| | ||||||| | ||||||||||||| |||||||| |||||||||| |||||||| |||| | |
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| T |
1140324 |
tatgaatataagactcacatggaatgacaa-atatagt--gtatgcatttatgtattatttta--tgttttctcaagctttaccacttccatgcccaaaa |
1140230 |
T |
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| Q |
197 |
tatataaaaagatcatgactttccaatgcagaaatcatttcctttacgtcgggtttagatcctgcctttccctgtaaagtaacatgacaaataaagaaga |
296 |
Q |
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||||||||||| || |||||||||||||||||| || ||| || ||| ||| || || |||||||||||||||||||| ||||| |||| |||| |
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| T |
1140229 |
tatataaaaagctcgtgactttccaatgcagaagccaattctttgacggtgggcttggaacctgcctttccctgtaaagtgacatg----ataagaaaga |
1140134 |
T |
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| Q |
297 |
cataaatattcactagatttgtagataaaacagctagcaggaatac |
342 |
Q |
| |
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| T |
1140133 |
aacaaaaattcactagacttatagattaaacaactagcaggaatac |
1140088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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