View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9448_low_15 (Length: 353)

Name: NF9448_low_15
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9448_low_15
NF9448_low_15
[»] chr1 (23 HSPs)
chr1 (18-307)||(5919024-5919313)
chr1 (306-353)||(49453614-49453661)
chr1 (307-353)||(39010951-39010997)
chr1 (308-353)||(36690461-36690506)
chr1 (308-353)||(36706562-36706607)
chr1 (304-353)||(50659077-50659126)
chr1 (306-349)||(28716284-28716327)
chr1 (306-352)||(31436956-31437002)
chr1 (307-353)||(51571563-51571609)
chr1 (308-353)||(2362506-2362551)
chr1 (308-353)||(40610366-40610411)
chr1 (306-346)||(48872838-48872878)
chr1 (310-353)||(1615174-1615217)
chr1 (306-353)||(22389413-22389459)
chr1 (306-353)||(28253152-28253199)
chr1 (307-346)||(49425880-49425919)
chr1 (308-346)||(4638069-4638107)
chr1 (307-353)||(46948116-46948162)
chr1 (308-353)||(31290097-31290142)
chr1 (299-352)||(37843315-37843368)
chr1 (311-352)||(50141827-50141868)
chr1 (306-346)||(15061990-15062030)
chr1 (309-349)||(51703002-51703042)
[»] chr7 (24 HSPs)
chr7 (308-353)||(5978716-5978761)
chr7 (308-353)||(12142021-12142066)
chr7 (306-353)||(8792487-8792534)
chr7 (306-353)||(46651809-46651856)
chr7 (308-353)||(10591289-10591334)
chr7 (307-353)||(33684817-33684863)
chr7 (306-352)||(37351877-37351923)
chr7 (306-352)||(43445545-43445591)
chr7 (307-352)||(6353867-6353912)
chr7 (308-353)||(26153797-26153842)
chr7 (306-346)||(7807199-7807239)
chr7 (308-352)||(21752796-21752840)
chr7 (306-345)||(43657147-43657186)
chr7 (306-353)||(48866817-48866864)
chr7 (308-353)||(40717127-40717173)
chr7 (304-353)||(19510242-19510291)
chr7 (308-349)||(21858888-21858929)
chr7 (308-353)||(28824640-28824685)
chr7 (301-346)||(32154432-32154477)
chr7 (299-340)||(32171015-32171056)
chr7 (306-346)||(155868-155908)
chr7 (306-346)||(43260135-43260175)
chr7 (306-353)||(47945120-47945168)
chr7 (306-353)||(47950550-47950598)
[»] chr5 (21 HSPs)
chr5 (308-353)||(9714024-9714069)
chr5 (306-353)||(2117527-2117574)
chr5 (306-353)||(9403650-9403697)
chr5 (307-353)||(27392590-27392636)
chr5 (306-352)||(33567126-33567172)
chr5 (308-353)||(39595411-39595456)
chr5 (309-353)||(125229-125273)
chr5 (306-353)||(20719902-20719949)
chr5 (307-353)||(11306833-11306879)
chr5 (308-353)||(24431507-24431552)
chr5 (309-349)||(12349926-12349966)
chr5 (306-353)||(19127261-19127308)
chr5 (306-345)||(33393704-33393743)
chr5 (308-346)||(3141640-3141678)
chr5 (307-352)||(17990352-17990397)
chr5 (312-353)||(31284287-31284328)
chr5 (308-353)||(39458778-39458823)
chr5 (306-342)||(6515326-6515362)
chr5 (306-346)||(11767877-11767917)
chr5 (313-353)||(34381149-34381189)
chr5 (307-343)||(35124829-35124865)
[»] chr4 (35 HSPs)
chr4 (307-352)||(31275284-31275329)
chr4 (308-352)||(5234360-5234404)
chr4 (306-353)||(42915106-42915153)
chr4 (307-353)||(51389453-51389499)
chr4 (304-353)||(1033285-1033334)
chr4 (309-353)||(5123480-5123524)
chr4 (309-353)||(29384087-29384131)
chr4 (306-349)||(25523083-25523126)
chr4 (306-353)||(31658056-31658103)
chr4 (306-353)||(36444282-36444329)
chr4 (306-349)||(47998734-47998777)
chr4 (306-352)||(36408091-36408137)
chr4 (306-352)||(36413214-36413260)
chr4 (306-352)||(46173675-46173721)
chr4 (306-352)||(51717171-51717217)
chr4 (308-353)||(15596533-15596578)
chr4 (308-353)||(38844379-38844424)
chr4 (308-353)||(53583017-53583062)
chr4 (306-346)||(31240793-31240833)
chr4 (306-346)||(36792477-36792517)
chr4 (306-353)||(4896387-4896434)
chr4 (306-353)||(11063976-11064023)
chr4 (307-346)||(22257084-22257123)
chr4 (308-353)||(1580171-1580217)
chr4 (306-352)||(55927122-55927168)
chr4 (308-352)||(2613505-2613550)
chr4 (308-353)||(16004216-16004261)
chr4 (308-353)||(28480427-28480472)
chr4 (308-353)||(28481301-28481346)
chr4 (308-353)||(28482176-28482221)
chr4 (307-353)||(53091114-53091164)
chr4 (308-352)||(3286956-3287000)
chr4 (306-346)||(39241189-39241229)
chr4 (306-346)||(51039004-51039044)
chr4 (308-352)||(51296066-51296110)
[»] chr3 (26 HSPs)
chr3 (307-352)||(7231894-7231939)
chr3 (308-353)||(28300535-28300580)
chr3 (308-353)||(29706040-29706085)
chr3 (306-353)||(11173587-11173634)
chr3 (306-353)||(20380776-20380823)
chr3 (305-352)||(37303521-37303568)
chr3 (306-353)||(46473265-46473312)
chr3 (307-353)||(46953086-46953132)
chr3 (308-353)||(33007498-33007543)
chr3 (309-353)||(28269943-28269987)
chr3 (309-353)||(30839594-30839638)
chr3 (306-346)||(31997947-31997987)
chr3 (317-353)||(37215129-37215165)
chr3 (308-352)||(37302963-37303007)
chr3 (306-346)||(51464153-51464193)
chr3 (314-353)||(5244235-5244274)
chr3 (307-346)||(6126599-6126638)
chr3 (306-353)||(9028010-9028057)
chr3 (307-346)||(43169642-43169681)
chr3 (311-349)||(44695153-44695191)
chr3 (306-343)||(9099466-9099503)
chr3 (308-349)||(42475866-42475907)
chr3 (306-346)||(108574-108614)
chr3 (306-346)||(32687846-32687886)
chr3 (312-352)||(51410942-51410982)
chr3 (306-346)||(51650501-51650541)
[»] chr6 (9 HSPs)
chr6 (154-294)||(29471105-29471245)
chr6 (306-349)||(2241713-2241756)
chr6 (306-352)||(32253919-32253965)
chr6 (308-353)||(32853033-32853078)
chr6 (304-352)||(30714811-30714859)
chr6 (308-352)||(30733147-30733191)
chr6 (306-353)||(1897823-1897870)
chr6 (306-346)||(9954693-9954733)
chr6 (305-353)||(31517066-31517114)
[»] chr8 (23 HSPs)
chr8 (308-353)||(40102160-40102205)
chr8 (306-353)||(23258169-23258216)
chr8 (306-345)||(40413250-40413289)
chr8 (307-353)||(21273598-21273644)
chr8 (305-346)||(30925540-30925581)
chr8 (305-353)||(3989042-3989090)
chr8 (306-353)||(5502499-5502546)
chr8 (308-351)||(9046960-9047003)
chr8 (306-353)||(43403921-43403968)
chr8 (307-346)||(45101540-45101579)
chr8 (307-353)||(1179513-1179559)
chr8 (307-353)||(28927818-28927864)
chr8 (307-341)||(40842073-40842107)
chr8 (308-353)||(7678869-7678914)
chr8 (257-294)||(31907502-31907539)
chr8 (308-352)||(5359476-5359520)
chr8 (314-353)||(20284844-20284884)
chr8 (314-353)||(21071473-21071513)
chr8 (317-353)||(22767267-22767303)
chr8 (306-346)||(32175100-32175140)
chr8 (306-346)||(34474095-34474135)
chr8 (306-346)||(42543367-42543407)
chr8 (311-351)||(44672125-44672165)
[»] scaffold0018 (1 HSPs)
scaffold0018 (306-353)||(36138-36186)
[»] scaffold0115 (1 HSPs)
scaffold0115 (306-353)||(15076-15123)
[»] scaffold0036 (1 HSPs)
scaffold0036 (306-353)||(18140-18187)
[»] chr2 (21 HSPs)
chr2 (306-353)||(3091878-3091925)
chr2 (306-353)||(13104616-13104663)
chr2 (306-353)||(32750135-32750182)
chr2 (306-353)||(34249718-34249765)
chr2 (306-353)||(36133111-36133158)
chr2 (307-353)||(7086012-7086058)
chr2 (307-353)||(11164264-11164310)
chr2 (308-353)||(1876241-1876286)
chr2 (314-353)||(2464274-2464313)
chr2 (306-353)||(13711198-13711245)
chr2 (306-353)||(23045298-23045345)
chr2 (311-353)||(12600185-12600227)
chr2 (307-353)||(15901893-15901939)
chr2 (306-352)||(31296730-31296776)
chr2 (308-346)||(34138925-34138963)
chr2 (308-353)||(14714123-14714168)
chr2 (308-353)||(19695581-19695626)
chr2 (307-344)||(19913931-19913968)
chr2 (308-353)||(29795573-29795618)
chr2 (308-352)||(23880233-23880277)
chr2 (306-346)||(26321584-26321624)
[»] scaffold0012 (1 HSPs)
scaffold0012 (143-233)||(199446-199536)
[»] scaffold0501 (1 HSPs)
scaffold0501 (312-353)||(10409-10450)
[»] scaffold0060 (1 HSPs)
scaffold0060 (308-346)||(6961-6999)
[»] scaffold0154 (1 HSPs)
scaffold0154 (308-353)||(9737-9782)
[»] scaffold0057 (1 HSPs)
scaffold0057 (308-352)||(39017-39061)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 5919024 - 5919313
Alignment:
Q  18 gaagaaattctacttgtgaagactgcattgagatgacttctttgtcaccctggtcttctttttgaaatagccatcccccatcctctatgataagctcatc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5919024 gaagaaattctacttgtgaagactgcattgagatgacttctttgtcaccctggtcttctttttggaatagccatcccccatcctctatgataagctcatc 5919123  T
Q  118 cggttcttgcatcatgacaatgctacttggtaactgaacaattccacaattacaaagatataatgttcgaagtcgagtaagattttgaaaagaaaatggc 217  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5919124 cagttcttgcatcatgacaatgctacttggtaactgaacaattccacaattacaaagatataatgttcgaagtcgagtaagattttgaaaagaaaatggc 5919223  T
Q  218 agttcctttatgggagttgtatacaagtgaacttgtcttatattttccatctctcctaatatttttggaaaactctcaaggttatcacaa 307  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5919224 aattcctttatgggagttgtatacaggtgaacttgtcttatattttccatctctcctaatatttttggaaaactctcaaggttatcacaa 5919313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 49453661 - 49453614
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||    
T  49453661 aagagtagtgatatttgaacaactatttgatacaacttttgtgacaac 49453614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 39010997 - 39010951
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  39010997 agagtagtgttatttgaacaaccatatgagacaacttttgtgacaac 39010951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 36690461 - 36690506
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||    
T  36690461 gagtagtgttatttgaacaaccatatgagacaacttttgtgacaac 36690506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 36706562 - 36706607
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||    
T  36706562 gagtagtgttatttgaacaaccatatgagacaacttttgtgacaac 36706607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 50659077 - 50659126
Alignment:
Q  304 acaagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  50659077 acaagagtagtgttatttgaacaaccatatgaaacaacttatgtgacaac 50659126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 349
Target Start/End: Complemental strand, 28716327 - 28716284
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtga 349  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  28716327 aagagtagtgatatttgaacaaccatttgagacaacttttgtga 28716284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 31437002 - 31436956
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||    
T  31437002 aagagtagtgttatttgaacaaccatatgagataacttttgtgacaa 31436956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 51571609 - 51571563
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||| ||||||||||||||||||| | |||||||||||||||||||    
T  51571609 agagttgtgatatttgaacaaccatttaatacaacttttgtgacaac 51571563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 2362551 - 2362506
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||    
T  2362551 gagtagtgatatttgaacaactatttgatacaatttttgtgacaac 2362506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 40610411 - 40610366
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||||    
T  40610411 gagtagtgatatttgaacatccatttgagacaacttttgtgacaac 40610366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 48872838 - 48872878
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  48872838 aagagtagtgatatttgaacaaccatttcatacaacttttg 48872878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 1615217 - 1615174
Alignment:
Q  310 gtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||| ||||||||||||||||||| | |||||||||||||||    
T  1615217 gtagtgttatttgaacaaccatatgagataacttttgtgacaac 1615174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 22389413 - 22389459
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  22389413 aagagtaatgatatttgaacaaccatttgat-caacttttgtgacaac 22389459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 28253199 - 28253152
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||| ||| ||||||||||||||||||| ||||||||||| |||||    
T  28253199 aagagtggtgttatttgaacaaccatatgagacaacttttgtaacaac 28253152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 49425919 - 49425880
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  49425919 agagtagtgatatttgaacaaccatttcatacaacttttg 49425880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 4638107 - 4638069
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  4638107 gagtagtgatatttgaacaaccatttcatacaacttttg 4638069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 46948162 - 46948116
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||| |||| ||| |||||| ||||||||||    
T  46948162 agagtagtgatatttgaacatccatttgagacaactcttgtgacaac 46948116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 31290097 - 31290142
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||| ||||||||||||||||||| | | |||||||||||||||||    
T  31290097 gagtggtgatatttgaacaaccatttcacacaacttttgtgacaac 31290142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 37843315 - 37843368
Alignment:
Q  299 ttatcacaagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||| ||||||||||||||||||||||| || ||||| || || ||||||||    
T  37843315 ttatcaaaagagtagtgatatttgaacaactatttgatataatttgtgtgacaa 37843368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 50141827 - 50141868
Alignment:
Q  311 tagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  50141827 tagtgttatttgaacaactatatgagacaacttttgtgacaa 50141868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 15062030 - 15061990
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||||| | ||| ||||||||    
T  15062030 aagagtagtgatatttgaacaaccatttcatataacttttg 15061990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 51703002 - 51703042
Alignment:
Q  309 agtagtgatatttgaacaaccatatgatacaacttttgtga 349  Q
    ||||||||||||||||||||||| | | |||||||||||||    
T  51703002 agtagtgatatttgaacaaccatttcagacaacttttgtga 51703042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 5978761 - 5978716
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  5978761 gagtagtgatatttgaacaaccatatgatacaactcttgtgacaac 5978716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 12142066 - 12142021
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  12142066 gagtagtgatatttgaacaaccatttgatacaacttttgtgacaac 12142021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 8792487 - 8792534
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||    
T  8792487 aagagtaatgatatttgaacaaccatttgatacaacttttgtgacaac 8792534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 46651856 - 46651809
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  46651856 aagagtagtgatatttgaacaaccatatgatacaattcttgtgacaac 46651809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 10591334 - 10591289
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||    
T  10591334 gagtagtgatatttgaacaaccatttgagacaacttttgtgacaac 10591289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 33684863 - 33684817
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||    
T  33684863 agagtagtgttatttgaacaactatatgaaacaacttttgtgacaac 33684817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 37351877 - 37351923
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  37351877 aagagtagtgatatttgaacaatcatttgatataacttttgtgacaa 37351923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 43445591 - 43445545
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||||||||||||||||| ||| |||||||| |||||||||||    
T  43445591 aagagtagtgatatttgaacaatcatttgatacaatttttgtgacaa 43445545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 6353912 - 6353867
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||    
T  6353912 agagtagtgatatttgaaaaactatttgatacaacttttgtgacaa 6353867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 26153842 - 26153797
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||    
T  26153842 gagtagtgatatttgaacaaacatatgagacaacttatgtgacaac 26153797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 7807239 - 7807199
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  7807239 aagagtagtgatatttgaacaaccatttcatacaacttttg 7807199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 21752840 - 21752796
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||    
T  21752840 gagtagtgttatttgaacaacaatatgaaacaacttttgtgacaa 21752796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 43657186 - 43657147
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaactttt 345  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  43657186 aagagtagtgatatttgaacaaccatttcatacaactttt 43657147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 48866817 - 48866864
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||| | || ||| |||||||||||||||||    
T  48866817 aagagtagtgatatttgaacatctatttgaaacaacttttgtgacaac 48866864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 40717127 - 40717173
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaac-ttttgtgacaac 353  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||    
T  40717127 gagtagtgatatttgaacaaccatttcatacaactttttgtgacaac 40717173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 19510242 - 19510291
Alignment:
Q  304 acaagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||| ||||||||||| ||||| | ||||||||||| |||||    
T  19510242 acaagagtagtgttatttgaacaatcatataagacaacttttgtaacaac 19510291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 21858929 - 21858888
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtga 349  Q
    |||||||||||||||||||||||| | | |||||||||||||    
T  21858929 gagtagtgatatttgaacaaccattttaaacaacttttgtga 21858888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 28824685 - 28824640
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||| |||||||||||||| |||| ||||||| |||||||||    
T  28824685 gagtagtgttatttgaacaaccaaatgagacaacttatgtgacaac 28824640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 32154432 - 32154477
Alignment:
Q  301 atcacaagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||| ||| |||||||||||||||||||||| | ||||||||||||    
T  32154432 atcaaaagggtagtgatatttgaacaaccatttcatacaacttttg 32154477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 32171015 - 32171056
Alignment:
Q  299 ttatcacaagagtagtgatatttgaacaaccatatgatacaa 340  Q
    |||||||| |||||||||||||||||||||||| ||| ||||    
T  32171015 ttatcacacgagtagtgatatttgaacaaccatttgagacaa 32171056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 155868 - 155908
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||||| | | ||||||||||    
T  155868 aagagtagtgatatttgaacaaccattttagacaacttttg 155908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 43260175 - 43260135
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||||| |||||||||||||||| | ||||||||||||    
T  43260175 aagagtagtcatatttgaacaaccatttcatacaacttttg 43260135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 47945168 - 47945120
Alignment:
Q  306 aagagtagtgatatttgaacaac-catatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| | | |||||||||||||| ||||||    
T  47945168 aagagtagtgatatttgaacaactcttttgatacaacttttgggacaac 47945120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 47950598 - 47950550
Alignment:
Q  306 aagagtagtgatatttgaacaac-catatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| | | |||||||||||||| ||||||    
T  47950598 aagagtagtgatatttgaacaactcttttgatacaacttttgggacaac 47950550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 9714024 - 9714069
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  9714024 gagtagtgatatttgaacaaccatatgatacaactcttgtgacaac 9714069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 2117527 - 2117574
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||    
T  2117527 aagagtagtgatatttgaacaactatttgatacaacttttgtgacaac 2117574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 9403697 - 9403650
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  9403697 aagagtagtgatatttaaacaaccatttgatacaacttttgtgacaac 9403650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 27392590 - 27392636
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  27392590 agagtagtgttatttgaacaaccatatgagacaacttttgtgacaac 27392636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 33567126 - 33567172
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  33567126 aagagtagtgatatatgaacaaccatttgatacaacttttgtgacaa 33567172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 39595456 - 39595411
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||    
T  39595456 gagtaatgatatttgaacaaccatttgatacaacttttgtgacaac 39595411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 125273 - 125229
Alignment:
Q  309 agtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||    
T  125273 agtagtgatatttgaacaaccatttgatacaacttttgcgacaac 125229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 20719902 - 20719949
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||||||    
T  20719902 aagagtagtgatatttgaacatccatttgagacaacttttgtgacaac 20719949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 11306879 - 11306833
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||| || |||||||||||||| ||||||    
T  11306879 agagtagtgatatttgaacaactatttgatacaacttttgagacaac 11306833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 24431507 - 24431552
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||||    
T  24431507 gagtagtgatatttgaacaaccatttgagacaactattgtgacaac 24431552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 12349966 - 12349926
Alignment:
Q  309 agtagtgatatttgaacaaccatatgatacaacttttgtga 349  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  12349966 agtagtgatatttgaacaactatttgatacaacttttgtga 12349926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 19127308 - 19127261
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||||||| | | |||||||||| ||||||    
T  19127308 aagagtagtgatatttgaacaaccattttaaacaacttttgcgacaac 19127261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 33393743 - 33393704
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaactttt 345  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  33393743 aagagtagtgttatttgaacaaccatatgagacaactttt 33393704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 3141678 - 3141640
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  3141678 gagtagtgatatttgaacaaccatttcatacaacttttg 3141640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 17990397 - 17990352
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||||||||||| ||||||| | ||| ||||||||||||||||    
T  17990397 agagtagtgatatttaaacaaccgtttgagacaacttttgtgacaa 17990352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 31284287 - 31284328
Alignment:
Q  312 agtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||| | |||||||||||| ||||||    
T  31284287 agtgatatttgaacaaccatttcatacaacttttgcgacaac 31284328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 39458823 - 39458778
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||| ||||| ||||||||||| |||||| ||||||||||||    
T  39458823 gagtagtgttatttaaacaaccatattatacaatttttgtgacaac 39458778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 6515326 - 6515362
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaact 342  Q
    |||||||||||||||||||||||||| | ||||||||    
T  6515326 aagagtagtgatatttgaacaaccatttcatacaact 6515362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 11767877 - 11767917
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||||| | | ||||||||||    
T  11767877 aagagtagtgatatttgaacaaccattttagacaacttttg 11767917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 34381189 - 34381149
Alignment:
Q  313 gtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||| ||||| || ||||||||||||    
T  34381189 gtgatatttgaacaaccatttgatataatttttgtgacaac 34381149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 35124865 - 35124829
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaactt 343  Q
    |||||||||||||||||||||| |||||| |||||||    
T  35124865 agagtagtgatatttgaacaactatatgagacaactt 35124829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 31275329 - 31275284
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  31275329 agagtagtgatatttgaacaaccatttgatacaacttttgtgacaa 31275284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 5234360 - 5234404
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  5234360 gagtagtgatatttgaacaaccatttgatacaacttttgtgacaa 5234404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 42915106 - 42915153
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||    
T  42915106 aagagtagtgatatttgaacaactatttgatacaacttttgtgacaac 42915153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 51389499 - 51389453
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||    
T  51389499 agagcagtgatatttgaacaaccatttgatacaacttttgtgacaac 51389453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 1033334 - 1033285
Alignment:
Q  304 acaagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||||||||| | | |||||||||||||||||    
T  1033334 acaagagtagtgatatttgaacaaccattttaaacaacttttgtgacaac 1033285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 5123480 - 5123524
Alignment:
Q  309 agtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||    
T  5123480 agtagtgttatttgaacaaccatatgagacaacttttgtgacaac 5123524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 29384087 - 29384131
Alignment:
Q  309 agtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||    
T  29384087 agtagtgatatttgaacaatcatatgatacaactcttgtgacaac 29384131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 25523083 - 25523126
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtga 349  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  25523083 aagagtagtgttatttgaacaaccatatgagacaacttttgtga 25523126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 31658103 - 31658056
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  31658103 aagagtagcgatatttgaacaaccatttgatacagcttttgtgacaac 31658056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 36444282 - 36444329
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||| |||||||||||| | ||||||||||    
T  36444282 aagagtagtgatatttgaacaatcatatgatacaattcttgtgacaac 36444329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 349
Target Start/End: Complemental strand, 47998777 - 47998734
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtga 349  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  47998777 aagagtagtgatatttgaacaatcatttgatacaacttttgtga 47998734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 36408091 - 36408137
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||    
T  36408091 aagagtggtgatatttgaacaactatttgatacaacttttgtgacaa 36408137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 36413214 - 36413260
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||    
T  36413214 aagagtggtgatatttgaacaactatttgatacaacttttgtgacaa 36413260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 46173721 - 46173675
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  46173721 aagagtaatgatatttgaataaccatttgatacaacttttgtgacaa 46173675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 51717171 - 51717217
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  51717171 aagagtagtgatatttgaacaatcatatgagacaacttatgtgacaa 51717217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 15596578 - 15596533
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||||| | | |||||||||||||||||    
T  15596578 gagtagtgatatttgaacaaccattttaaacaacttttgtgacaac 15596533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 38844379 - 38844424
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||    
T  38844379 gagtaatgttatttgaacaaccatatgagacaacttttgtgacaac 38844424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 53583017 - 53583062
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||    
T  53583017 gagtactgttatttgaacaaccatatgagacaacttttgtgacaac 53583062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 31240833 - 31240793
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  31240833 aagagtagtgatatttgaacaaccatttcatacaacttttg 31240793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 36792517 - 36792477
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  36792517 aagagtagtgatatttgaacaaccatttcatacaacttttg 36792477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 4896387 - 4896434
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||| | || ||| |||||||||||||||||    
T  4896387 aagagtagtgatatttgaacatctatttgaaacaacttttgtgacaac 4896434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 11063976 - 11064023
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||||||| | | |||||||| ||||||||    
T  11063976 aagagtagtgatatttgaacaaccatttaagacaactttggtgacaac 11064023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 22257084 - 22257123
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  22257084 agagtagtgatatttgaacaaccatttcatacaacttttg 22257123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 1580171 - 1580217
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaac-ttttgtgacaac 353  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||    
T  1580171 gagtagtgatatttgaacaaccatttcatacaactttttgtgacaac 1580217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 55927168 - 55927122
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||||||||||||||||| |||| ||| |||| |||||||||||    
T  55927168 aagagtagtgatatttgaacatccatttgagacaatttttgtgacaa 55927122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 2613505 - 2613550
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgat-acaacttttgtgacaa 352  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||    
T  2613505 gagtaatgatatttgaacaaccatttgataacaacttttgtgacaa 2613550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 16004216 - 16004261
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||| |||| ||| |||||| ||||||||||    
T  16004216 gagtagtgatatttgaacatccatttgagacaactcttgtgacaac 16004261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 28480427 - 28480472
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||| || ||| |||||| ||||||||||    
T  28480427 gagtagtgatatttgaacaactatttgagacaactattgtgacaac 28480472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 28481301 - 28481346
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||| || ||| |||||| ||||||||||    
T  28481301 gagtagtgatatttgaacaactatttgagacaactattgtgacaac 28481346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 28482176 - 28482221
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||| || ||| |||||| ||||||||||    
T  28482176 gagtagtgatatttgaacaactatttgagacaactattgtgacaac 28482221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 53091114 - 53091164
Alignment:
Q  307 agagtagtgatatttgaacaaccata----tgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||||||     |||||||||||||||||||||    
T  53091114 agagtagtgatatttgaacaaccatccatttgatacaacttttgtgacaac 53091164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 3287000 - 3286956
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||| ||||||||||||||||||| | | ||||||||||||||||    
T  3287000 gagtggtgatatttgaacaaccatttcacacaacttttgtgacaa 3286956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 39241189 - 39241229
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||| ||||||||| ||| ||||||||||    
T  39241189 aagagtagtgatattttaacaaccatttgagacaacttttg 39241229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 51039004 - 51039044
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||| ||||||||| | ||||||||||||    
T  51039004 aagagtagtgatatttaaacaaccatttcatacaacttttg 51039044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 51296066 - 51296110
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||||||||||||||| | || ||| ||||||||||||||||    
T  51296066 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaa 51296110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 7231894 - 7231939
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  7231894 agagtagtgatatttgaacaaccatttgatacaacttttgtgacaa 7231939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 28300535 - 28300580
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  28300535 gagtagtgatatttgaacaaccatatgatacaactcttgtgacaac 28300580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 29706085 - 29706040
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||| || |||||||||||||||||||||    
T  29706085 gagtagtgatatttgaacaactatttgatacaacttttgtgacaac 29706040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 11173634 - 11173587
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||| | |||||||||||||||| |||||||||||||||||||||    
T  11173634 aagagtaataatatttgaacaaccatttgatacaacttttgtgacaac 11173587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 20380776 - 20380823
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||||||| | | |||||||||||||||||    
T  20380776 aagagtagtgatatttgaacaaccattttaaacaacttttgtgacaac 20380823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 37303568 - 37303521
Alignment:
Q  305 caagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  37303568 caagagtagtgttatttgaacaactatatgagacaacttttgtgacaa 37303521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 46473312 - 46473265
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  46473312 aagagtaatgatatttgaacaaccatttgatacaacttttatgacaac 46473265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 46953132 - 46953086
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||    
T  46953132 agagtagtgatatttgaacaactatttgatacaacttttatgacaac 46953086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 33007543 - 33007498
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||| ||||||||||||||||||| |||| ||||||||||||    
T  33007543 gagtagtgttatttgaacaaccatatgagacaatttttgtgacaac 33007498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 28269987 - 28269943
Alignment:
Q  309 agtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||||    
T  28269987 agtagtgttatttgaacaaccatatgagacaacttttgcgacaac 28269943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 30839638 - 30839594
Alignment:
Q  309 agtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||||    
T  30839638 agtagtgatatttaaacaatcatatgatacaactcttgtgacaac 30839594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 31997987 - 31997947
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  31997987 aagagtagtgatatttgaacaaccatttgagacaacttttg 31997947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 37215129 - 37215165
Alignment:
Q  317 tatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37215129 tatttgaacaaccatatgagacaacttttgtgacaac 37215165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 37302963 - 37303007
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||    
T  37302963 gagtagtgttatttgaacaagcatatgagacaacttttgtgacaa 37303007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 51464153 - 51464193
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  51464153 aagagtagtgatatttgaacaaccattttatacaacttttg 51464193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 353
Target Start/End: Original strand, 5244235 - 5244274
Alignment:
Q  314 tgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  5244235 tgatatttgaacaaccatattttacaacttttgtgacaac 5244274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 6126638 - 6126599
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  6126638 agagtagtgatatttgaacaaccatttcatacaacttttg 6126599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 9028057 - 9028010
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||| |||||||||||||||||||| |||||| | ||||||||||||    
T  9028057 aagagaagtgatatttgaacaaccatttgatacgatttttgtgacaac 9028010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 43169642 - 43169681
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  43169642 agagtagtgatatttgaacaaccatttcatacaacttttg 43169681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 44695191 - 44695153
Alignment:
Q  311 tagtgatatttgaacaaccatatgatacaacttttgtga 349  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  44695191 tagtgatatttgaacaaccatttcatacaacttttgtga 44695153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 9099466 - 9099503
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaactt 343  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  9099466 aagagtagtgttatttgaacaaccatatgagacaactt 9099503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 42475866 - 42475907
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtga 349  Q
    |||||||| ||||||||||||||||| | |||||||||||||    
T  42475866 gagtagtgttatttgaacaaccatataagacaacttttgtga 42475907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 108614 - 108574
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||||||||||||||||||| || | ||||||||||||    
T  108614 aagagtagtgatatttgaacaactatttcatacaacttttg 108574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 32687846 - 32687886
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||| ||||||||||||||| || ||||||||||||||    
T  32687846 aagagtaatgatatttgaacaactatttgatacaacttttg 32687886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 51410982 - 51410942
Alignment:
Q  312 agtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||| ||||||||||||||||||| | ||||||||||||||    
T  51410982 agtgttatttgaacaaccatatgagataacttttgtgacaa 51410942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 51650541 - 51650501
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||| ||||||||||||||||||| | ||||||||||||    
T  51650541 aagagtggtgatatttgaacaaccatttcatacaacttttg 51650501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 294
Target Start/End: Complemental strand, 29471245 - 29471105
Alignment:
Q  154 aacaattccacaattacaaagatataatgttcgaagtcgagtaagattttgaaaagaaaatggcagttcctttatgggagttgtatacaagtgaacttgt 253  Q
    ||||| |||||| |||||  ||||||||||| || |  |||||||||||||||| | ||| |||| ||| | |||| ||||  ||| |||||||| || |    
T  29471245 aacaactccacagttacattgatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaagtgaatttct 29471146  T
Q  254 cttatattttccatctctcctaatatttttggaaaactctc 294  Q
     ||||||| | ||||||||| |||||||||||||| |||||    
T  29471145 gttatattattcatctctcccaatatttttggaaatctctc 29471105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 2241713 - 2241756
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtga 349  Q
    |||| ||||||||||||||||||||| |||||||||||||||||    
T  2241713 aagaatagtgatatttgaacaaccatttgatacaacttttgtga 2241756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 32253965 - 32253919
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||||||||||||||||||| || || |||||||||||||||||    
T  32253965 aagagtagtgatatttgaacaactatttggtacaacttttgtgacaa 32253919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 32853033 - 32853078
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||    
T  32853033 gagtagtgatatttgaacaactatttgatacaatttttgtgacaac 32853078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 30714859 - 30714811
Alignment:
Q  304 acaagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||||||||||||||||||| ||| ||| | ||||||||||||||    
T  30714859 acaagagtagtgatatttgaacaatcatttgagataacttttgtgacaa 30714811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 30733191 - 30733147
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||    
T  30733191 gagtagtgatatttaaacaaccatttgagacaacttttgtgacaa 30733147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 1897870 - 1897823
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||| | || ||| |||||||||||||||||    
T  1897870 aagagtagtgatatttgaacatctatttgaaacaacttttgtgacaac 1897823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 9954733 - 9954693
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||| |||||||||||||||||||| | ||||||||||||    
T  9954733 aagaggagtgatatttgaacaaccatttaatacaacttttg 9954693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 31517066 - 31517114
Alignment:
Q  305 caagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||| |||||||||||| | |||| ||||||| |||||||||    
T  31517066 caagagtagtgttatttgaacaactaaatgagacaacttatgtgacaac 31517114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 40102205 - 40102160
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||    
T  40102205 gagtagtgttatttgaacaaccatatgagacaacttttgtgacaac 40102160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 23258216 - 23258169
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  23258216 aagagtagtgatatttgaacaaccatttgaaacaatttttgtgacaac 23258169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 40413250 - 40413289
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaactttt 345  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  40413250 aagagtagtgatatttgaacaaccatttgatacaactttt 40413289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 21273598 - 21273644
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||| || | |||||||||||||||||||    
T  21273598 agagtagtgatatttgaacaactatttcatacaacttttgtgacaac 21273644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 30925540 - 30925581
Alignment:
Q  305 caagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  30925540 caagagtagtgatatttgaacaaccattttatacaacttttg 30925581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 3989090 - 3989042
Alignment:
Q  305 caagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||| |||||||||||||| |||| ||||||| |||||||||    
T  3989090 caagagtagtgttatttgaacaaccaaatgagacaacttatgtgacaac 3989042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 5502546 - 5502499
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||||||| ||| ||||| || ||||||||||||    
T  5502546 aagagtagtgatatttgaacaatcatttgatataatttttgtgacaac 5502499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 9046960 - 9047003
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgaca 351  Q
    ||||||||||||||||||||| || |||||||| ||||||||||    
T  9046960 gagtagtgatatttgaacaactatttgatacaatttttgtgaca 9047003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 43403968 - 43403921
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| || ||| |||||||| ||||||||    
T  43403968 aagagtagtgatatttgaacaactatttgagacaactttcgtgacaac 43403921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 45101579 - 45101540
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  45101579 agagtagtgatatttgaacaaccatttcatacaacttttg 45101540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 1179559 - 1179513
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||| |||||| || ||||| |||||||||||||||    
T  1179559 agagtagtgatatttaaacaactatttgatataacttttgtgacaac 1179513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 28927864 - 28927818
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||| ||||||||||||||||||| ||||| || ||||||||||||    
T  28927864 agagtggtgatatttgaacaaccatttgataaaatttttgtgacaac 28927818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 40842107 - 40842073
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaac 341  Q
    ||||||||||||||||||||||||| |||||||||    
T  40842107 agagtagtgatatttgaacaaccatttgatacaac 40842073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 7678914 - 7678869
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||| ||||||||||||||| || ||||||||||||||| |||||    
T  7678914 gagtaatgatatttgaacaactatttgatacaacttttgtaacaac 7678869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 31907539 - 31907502
Alignment:
Q  257 atattttccatctctcctaatatttttggaaaactctc 294  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  31907539 atattttccatctttcctaatatttctggaaaactctc 31907502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 5359520 - 5359476
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||||||||||||||| | || ||| ||||||||||||||||    
T  5359520 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaa 5359476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 20284884 - 20284844
Alignment:
Q  314 tgatatttgaacaaccatatgat-acaacttttgtgacaac 353  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  20284884 tgatatttgaacaaccatttgatgacaacttttgtgacaac 20284844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 21071513 - 21071473
Alignment:
Q  314 tgatatttgaacaaccatatgat-acaacttttgtgacaac 353  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  21071513 tgatatttgaacaaccatttgatgacaacttttgtgacaac 21071473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 22767303 - 22767267
Alignment:
Q  317 tatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  22767303 tatttgaacaaccgtatgagacaacttttgtgacaac 22767267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 32175140 - 32175100
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||| |||||||||||||||||| | ||||||||||||    
T  32175140 aagagtaatgatatttgaacaaccatttcatacaacttttg 32175100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 34474135 - 34474095
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||| |||||||||||||||||| | ||||||||||||    
T  34474135 aagagtaatgatatttgaacaaccatttcatacaacttttg 34474095  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 42543367 - 42543407
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    ||||||||||||| |||||||||||| | ||||||||||||    
T  42543367 aagagtagtgataattgaacaaccatttcatacaacttttg 42543407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 44672125 - 44672165
Alignment:
Q  311 tagtgatatttgaacaaccatatgatacaacttttgtgaca 351  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  44672125 tagtgatatttgaacaattatttgatacaacttttgtgaca 44672165  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 36186 - 36138
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaac-ttttgtgacaac 353  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  36186 aagagtagtgatatttgaacaaccatttgatacaactttttgtgacaac 36138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 15076 - 15123
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| || || ||||||||||||||||||    
T  15076 aagagtagtgatatttgaacaactatttggtacaacttttgtgacaac 15123  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 18187 - 18140
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| || ||||||||||||| |||||||    
T  18187 aagagtagtgatatttgaacaactatttgatacaacttttatgacaac 18140  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 3091925 - 3091878
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||    
T  3091925 aagagtagtgatatttgaacaattatttgatacaacttttgtgacaac 3091878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 13104663 - 13104616
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  13104663 aagagtagtgttatttgaacaaccatatgagacaatttttgtgacaac 13104616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 32750182 - 32750135
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  32750182 aagagtagtgttatttgaacaaccatatgagacaatttttgtgacaac 32750135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 34249765 - 34249718
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  34249765 aagagtagtgttatttgaacaaccatatgagacaatttttgtgacaac 34249718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 36133158 - 36133111
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| || | |||||||||||||||||||    
T  36133158 aagagtagtgatatttgaacaactatttcatacaacttttgtgacaac 36133111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 7086012 - 7086058
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  7086012 agagtagtgttatttgaacaaccatatgagacaatttttgtgacaac 7086058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 11164264 - 11164310
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||| |||||||||||||||| || |||||||||||||||||||||    
T  11164264 agagtggtgatatttgaacaactatttgatacaacttttgtgacaac 11164310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 1876241 - 1876286
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||| ||||| ||||||||||||| |||||||||||||||||    
T  1876241 gagtagtgttatttcaacaaccatatgagacaacttttgtgacaac 1876286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 2464313 - 2464274
Alignment:
Q  314 tgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  2464313 tgatatttgaacatccatttgatacaacttttgtgacaac 2464274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 13711245 - 13711198
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||||||| || |  ||||||||||||||||||    
T  13711245 aagagtagtgatatttgaacaactattttgtacaacttttgtgacaac 13711198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 23045345 - 23045298
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||| |||||||||||||| |||| ||||||| |||||||||    
T  23045345 aagagtagtgttatttgaacaaccaaatgagacaacttatgtgacaac 23045298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 12600227 - 12600185
Alignment:
Q  311 tagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||||||||||||| || | |||||||||||||||||||    
T  12600227 tagtgatatttgaacaactatttcatacaacttttgtgacaac 12600185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 15901893 - 15901939
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  15901893 agagtagtgttatttgaacaatcatatgagataacttttgtgacaac 15901939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 31296730 - 31296776
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||||||||||||||| |||||||||  ||||||| ||||||||    
T  31296730 aagagtagtgatatttgaataaccatatgggacaacttatgtgacaa 31296776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 34138925 - 34138963
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  34138925 gagtagtgatatttgaacaaccatttcatacaacttttg 34138963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 14714168 - 14714123
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||| |||| ||| |||| ||||||||||||    
T  14714168 gagtagtgatatttgaacatccatttgagacaatttttgtgacaac 14714123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 19695581 - 19695626
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||| |||||||||||||| |||| ||||||| |||||||||    
T  19695581 gagtagtgttatttgaacaaccaaatgagacaacttatgtgacaac 19695626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 19913968 - 19913931
Alignment:
Q  307 agagtagtgatatttgaacaaccatatgatacaacttt 344  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  19913968 agagtagtgatatttgaacaaccatttcatacaacttt 19913931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 29795618 - 29795573
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    ||||||||||||||||||| | || ||| |||||||||||||||||    
T  29795618 gagtagtgatatttgaacatcaatttgaaacaacttttgtgacaac 29795573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 23880277 - 23880233
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||| || ||||||||||||||||||| ||||||||| ||||||    
T  23880277 gagtaatgttatttgaacaaccatatgagacaacttttatgacaa 23880233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 26321584 - 26321624
Alignment:
Q  306 aagagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||| ||| | ||||||||||||    
T  26321584 aagagtagtgatatttgaacaatcatttcatacaacttttg 26321624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 199446 - 199536
Alignment:
Q  143 cttggtaactgaacaattccacaattacaaagatataatgttcgaagtcgagtaagattttgaaaagaaaatggcagttcctttatgggag 233  Q
    |||||||||| ||||||| |||| ||||  | |||||||| | ||||  | |||||||||||||| |||||||||| ||| ||||||||||    
T  199446 cttggtaacttaacaatttcacacttactcatatataatgattgaagctgtgtaagattttgaaatgaaaatggcaattcttttatgggag 199536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 10409 - 10450
Alignment:
Q  312 agtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  10409 agtgttatttgaacaaccatatgagacaacttttgtgacaac 10450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 6999 - 6961
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttg 346  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  6999 gagtagtgatatttgaacaaccattttatacaacttttg 6961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 9737 - 9782
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaac 353  Q
    |||||||| ||||||||||| |||||||  ||||||||||||||||    
T  9737 gagtagtgttatttgaacaatcatatgaggcaacttttgtgacaac 9782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 39061 - 39017
Alignment:
Q  308 gagtagtgatatttgaacaaccatatgatacaacttttgtgacaa 352  Q
    ||||||||||||||||||| | || ||| ||||||||||||||||    
T  39061 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaa 39017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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