View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_21 (Length: 254)
Name: NF9448_low_21
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 7555825 - 7556066
Alignment:
| Q |
1 |
gttctccattcgttgttgccaatctatgggaagtaacagataaggatataaatctatttagcaaggttatgcttgatgcttggttgaaagaaaggtccaa |
100 |
Q |
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| T |
7555825 |
gttctccattcgttgttgccaatctatgggaagtaacagataaggatataaatctatttagcaaggttatgcttgatgcttggttgaaagaaaggtccaa |
7555924 |
T |
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| Q |
101 |
agttgcaatgcaatgcttgcagtgcaacttactatcagaaaaatttgaggcgattaatttgaagggcgggaagggtagagcaaagagaaaagtcccaaag |
200 |
Q |
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| T |
7555925 |
agttacaatgcaatgcttgcagtgcaacttactatcagaaaaatttgaggccattaatttgaagggcgggaagggtagagcaaagagaaaagtcccaaag |
7556024 |
T |
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| Q |
201 |
aagaaatcattaaagttgcctgagagtgattcacttgagaat |
242 |
Q |
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| T |
7556025 |
aagaaatcattaaagtcgcctgagagtgattcacttgagaat |
7556066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1140496 - 1140731
Alignment:
| Q |
1 |
gttctccattcgttgttgccaatctatgggaagtaacagataaggatataaatctatttagcaaggttatgcttgatgcttggttgaaagaaaggtccaa |
100 |
Q |
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||||||||| | |||||||||| || |||||||||||||| ||||||||| ||| |||| |||||| |||| ||||||| ||||||||||||||||| || |
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| T |
1140496 |
gttctccatccattgttgccaacctgtgggaagtaacagacaaggatatagatcgatttggcaaggctatgtttgatgcctggttgaaagaaaggtcaaa |
1140595 |
T |
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| Q |
101 |
agttgcaatgcaatgcttgcagtgcaacttactatcagaaaaatttgaggcgattaatttgaagggcgggaagggtagagcaaagagaaaagtcccaaag |
200 |
Q |
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| T |
1140596 |
agttgacattcaatgcttgcagtgcaacttattatctgaagaactagaggccatgaatttgaagggtggcaagggtagaggaaaaagaaaagtcccaaag |
1140695 |
T |
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| Q |
201 |
aagaaatcattaaagttgcctgagagtgattcactt |
236 |
Q |
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| T |
1140696 |
aagaaatcactagagttgcctgagaatgattcactt |
1140731 |
T |
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