View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_22 (Length: 252)
Name: NF9448_low_22
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 40187623 - 40187865
Alignment:
| Q |
1 |
tattgtttggaacacttatttattaataaaattcctttaccttaccttacaagtgtagtgattgtgttatcaccacacaaattgtaagaaaagcaaccaa |
100 |
Q |
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| T |
40187623 |
tattgtttcgaacacttatttattaataaaattcctttaccttaccttacaagtgtagtgattgtgttatcaccacacaaattgtaagaaaagcaaccaa |
40187722 |
T |
|
| Q |
101 |
tcaaacaaaatagaatagcaagtttcactacaataaatgaattttatgttacatttttgtgctttgcaatgtgcacacctagcatgaccaataaatattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187723 |
tcaaacaaaatagaatagcaagtttcactacaataaatgaattttatgttacatttttgtgctttgcaatgtgcacacctagcatgaccaataaatattg |
40187822 |
T |
|
| Q |
201 |
agagggacttgttgcatccactatacaagaatgtggtctctgc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187823 |
agagggacttgttgcatccactatacaagaatgtggtctctgc |
40187865 |
T |
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