View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9448_low_24 (Length: 250)

Name: NF9448_low_24
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9448_low_24
NF9448_low_24
[»] chr6 (12 HSPs)
chr6 (35-240)||(2817760-2817965)
chr6 (37-240)||(34142366-34142568)
chr6 (37-240)||(34154982-34155184)
chr6 (37-240)||(31981840-31982042)
chr6 (126-240)||(34376206-34376320)
chr6 (130-240)||(24191080-24191190)
chr6 (142-238)||(6728159-6728255)
chr6 (141-240)||(24192188-24192287)
chr6 (166-240)||(22697920-22697994)
chr6 (166-240)||(22703096-22703170)
chr6 (37-72)||(24191031-24191066)
chr6 (37-72)||(24192140-24192175)
[»] chr3 (16 HSPs)
chr3 (37-240)||(54270922-54271124)
chr3 (35-240)||(30338366-30338570)
chr3 (35-240)||(34128783-34128987)
chr3 (35-240)||(17358115-17358318)
chr3 (37-240)||(3476561-3476763)
chr3 (37-240)||(3482025-3482230)
chr3 (35-227)||(30341585-30341771)
chr3 (141-237)||(4117310-4117406)
chr3 (145-238)||(10321722-10321815)
chr3 (166-240)||(15762707-15762781)
chr3 (166-240)||(15767868-15767942)
chr3 (166-240)||(17369010-17369084)
chr3 (166-240)||(20090339-20090413)
chr3 (166-240)||(20095464-20095538)
chr3 (166-240)||(55129081-55129155)
chr3 (201-240)||(10321822-10321861)
[»] chr1 (12 HSPs)
chr1 (35-240)||(3584878-3585083)
chr1 (35-240)||(5730382-5730587)
chr1 (131-240)||(48246392-48246501)
chr1 (166-240)||(27711614-27711688)
chr1 (166-240)||(34317962-34318036)
chr1 (166-240)||(37409267-37409341)
chr1 (34-107)||(48246320-48246390)
chr1 (166-240)||(36684392-36684466)
chr1 (166-240)||(37404148-37404222)
chr1 (166-240)||(27716734-27716808)
chr1 (166-240)||(11250853-11250927)
chr1 (80-110)||(5725220-5725250)
[»] scaffold0594 (1 HSPs)
scaffold0594 (35-239)||(8822-9025)
[»] scaffold0060 (1 HSPs)
scaffold0060 (37-240)||(37287-37489)
[»] chr4 (21 HSPs)
chr4 (37-240)||(41393520-41393723)
chr4 (35-240)||(53797906-53798109)
chr4 (37-240)||(13710946-13711148)
chr4 (37-240)||(9763633-9763835)
chr4 (37-240)||(13695439-13695641)
chr4 (36-240)||(51019002-51019191)
chr4 (37-240)||(47045934-47046124)
chr4 (166-240)||(8985135-8985209)
chr4 (166-240)||(13700801-13700875)
chr4 (166-240)||(21304683-21304757)
chr4 (166-240)||(39999413-39999487)
chr4 (166-240)||(40004371-40004445)
chr4 (166-240)||(54343547-54343621)
chr4 (166-240)||(54348701-54348775)
chr4 (166-240)||(8980015-8980089)
chr4 (166-240)||(21299563-21299637)
chr4 (166-240)||(36354486-36354560)
chr4 (166-240)||(54991767-54991841)
chr4 (176-240)||(36359672-36359736)
chr4 (176-239)||(54990550-54990613)
chr4 (107-163)||(4205920-4205976)
[»] chr7 (17 HSPs)
chr7 (37-240)||(42572222-42572424)
chr7 (37-240)||(12934674-12934876)
chr7 (37-240)||(16539029-16539230)
chr7 (37-240)||(16626432-16626633)
chr7 (37-240)||(19309227-19309429)
chr7 (57-240)||(21080675-21080857)
chr7 (79-240)||(17495680-17495840)
chr7 (79-240)||(17557374-17557534)
chr7 (87-240)||(43893146-43893298)
chr7 (126-240)||(47176854-47176968)
chr7 (131-240)||(2234332-2234448)
chr7 (40-121)||(32212341-32212421)
chr7 (188-240)||(32212419-32212471)
chr7 (166-240)||(33238346-33238420)
chr7 (166-240)||(33243523-33243597)
chr7 (166-240)||(47994144-47994218)
chr7 (166-240)||(47999319-47999393)
[»] scaffold0166 (2 HSPs)
scaffold0166 (37-240)||(13355-13557)
scaffold0166 (64-240)||(18835-19010)
[»] chr2 (10 HSPs)
chr2 (35-240)||(4163203-4163395)
chr2 (35-237)||(28751364-28751544)
chr2 (166-240)||(42723128-42723202)
chr2 (166-240)||(42728297-42728371)
chr2 (166-238)||(44754283-44754355)
chr2 (166-238)||(44759449-44759521)
chr2 (166-240)||(40392610-40392684)
chr2 (177-239)||(40519925-40519987)
chr2 (166-240)||(44096646-44096720)
chr2 (177-239)||(40518213-40518275)
[»] chr5 (14 HSPs)
chr5 (36-239)||(36254114-36254309)
chr5 (79-240)||(1413710-1413870)
chr5 (64-240)||(24776452-24776627)
chr5 (35-237)||(26709383-26709563)
chr5 (35-237)||(26979117-26979297)
chr5 (64-240)||(24770997-24771172)
chr5 (79-148)||(1413444-1413512)
chr5 (166-240)||(17505244-17505318)
chr5 (166-240)||(17510349-17510423)
chr5 (166-240)||(42019864-42019938)
chr5 (176-240)||(41858877-41858941)
chr5 (166-240)||(42024644-42024718)
chr5 (110-160)||(1413507-1413557)
chr5 (166-240)||(43579951-43580025)
[»] chr8 (14 HSPs)
chr8 (35-191)||(17955447-17955602)
chr8 (96-237)||(21642941-21643081)
chr8 (96-237)||(21643316-21643456)
chr8 (96-237)||(21641441-21641581)
chr8 (96-237)||(21641816-21641956)
chr8 (96-237)||(21642191-21642331)
chr8 (96-237)||(21642566-21642706)
chr8 (112-240)||(24884990-24885118)
chr8 (111-240)||(21643770-21643899)
chr8 (147-240)||(43998955-43999048)
chr8 (182-240)||(42514180-42514238)
chr8 (166-240)||(32010870-32010944)
chr8 (166-240)||(32016044-32016118)
chr8 (166-239)||(2165543-2165616)
[»] scaffold0517 (1 HSPs)
scaffold0517 (166-240)||(3854-3928)
[»] scaffold0055 (1 HSPs)
scaffold0055 (166-240)||(3368-3442)
[»] scaffold0052 (1 HSPs)
scaffold0052 (166-240)||(81093-81167)
[»] scaffold0014 (2 HSPs)
scaffold0014 (166-240)||(26717-26791)
scaffold0014 (166-240)||(31889-31963)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 2817760 - 2817965
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817760 gagaccaagtctcacccgttttccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 2817859  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  2817860 cgcgaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgagattctttactccaaaaccaagaatcgaatcctct 2817959  T
Q  235 tctctg 240  Q
    ||||||    
T  2817960 tctctg 2817965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 34142568 - 34142366
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    |||||| || ||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||| |  |||||||||||    
T  34142568 gaccaaatcccacacgtttttcacacgtgcaagcttcctctccacgtttccgcgtcgtgg-ttaccattacgtgggtcgtgggctgagtttggcgggtcg 34142470  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34142469 cgaaccgggtcggcggagaaaacgaggaaaattcccctctataaataaagtgctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttc 34142370  T
Q  237 tctg 240  Q
    ||||    
T  34142369 tctg 34142366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 34155184 - 34154982
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    |||||| || ||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||| |  |||||||||||    
T  34155184 gaccaaatcccacacgtttttcacacgtgcaagcttcctctccacgtttccgcgtcgtgg-ttaccattacgtgggtcgtgggctgagtttggcgggtcg 34155086  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34155085 cgaaccgggtcggcggagaaaacgaggaaaattcccctctataaataaagtgctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttc 34154986  T
Q  237 tctg 240  Q
    ||||    
T  34154985 tctg 34154982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 31982042 - 31981840
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |    |||||||||||    
T  31982042 gaccaagtctcacacatttttcacacgtgcaagcttccgctccacgttttcgcgtcgtgg-ttaccgttacgtgggtcgtgggatgggtttggcgggtcg 31981944  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    ||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  31981943 cgaaccgggtcggcggagaaaacgaagtcgaatcccctctataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatactcttc 31981844  T
Q  237 tctg 240  Q
    ||||    
T  31981843 tctg 31981840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 34376320 - 34376206
Alignment:
Q  126 ttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatc 225  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34376320 ttggcgggtcgcgaaccgggtcggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatc 34376221  T
Q  226 gaatcctcttctctg 240  Q
    |||||||||||||||    
T  34376220 gaatcctcttctctg 34376206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 24191080 - 24191190
Alignment:
Q  130 cgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaat 229  Q
    ||||||||||||||||||| || ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24191080 cgggtcgcgaaccgggtcgacgaagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaat 24191179  T
Q  230 cctcttctctg 240  Q
    |||||||||||    
T  24191180 cctcttctctg 24191190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 6728159 - 6728255
Alignment:
Q  142 cgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctc 238  Q
    |||||| ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6728159 cgggtcagcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatccccttctc 6728255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 24192188 - 24192287
Alignment:
Q  141 ccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    |||||||| || ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24192188 ccgggtcgacgaagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctg 24192287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 22697920 - 22697994
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  22697920 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 22697994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 22703096 - 22703170
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  22703096 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 22703170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 24191031 - 24191066
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagctt 72  Q
    ||||||||||||||||||||||||||||||||||||    
T  24191031 gaccaagtctcacacgtttttcacacgcgcaagctt 24191066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 24192140 - 24192175
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagctt 72  Q
    ||||||||||||||||||||||||||||||||||||    
T  24192140 gaccaagtctcacacgtttttcacacgcgcaagctt 24192175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 54271124 - 54270922
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| ||||    
T  54271124 gaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgggtcgtgggctaagtttggcgcgtcg 54271026  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54271025 cgaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 54270926  T
Q  237 tctg 240  Q
    ||||    
T  54270925 tctg 54270922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 30338366 - 30338570
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||    
T  30338366 gagaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgggtcgtgggctatgtttggcgggt 30338464  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
    ||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  30338465 cgcaaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttggattcttcactccaaaaccgagaatcgaatcctct 30338564  T
Q  235 tctctg 240  Q
    ||||||    
T  30338565 tctctg 30338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 34128783 - 34128987
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||    
T  34128783 gagaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccacgtcgtgggttaccgttgc-tgggtcgtgggctaacgttggcgggt 34128881  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| | | ||||||||||||||||| ||||||||||||||||    
T  34128882 cgcgaaccgggtcggcggagaaaacgaggtgaaatcccctctataaatagagaggtcgggatttgcattcttcactccaaaactgagaatcgaatcctct 34128981  T
Q  235 tctctg 240  Q
    ||||||    
T  34128982 tctctg 34128987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 17358318 - 17358115
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  17358318 gagaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccgagtcgtgggttaccgttgc-tgggtcgtgggctaacgttggcgggt 17358220  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
    |||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||||||    
T  17358219 cgcgaaccgg-tcggcagagaaaacgaggtgaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaactgagaatcgaatcctct 17358121  T
Q  235 tctctg 240  Q
    ||||||    
T  17358120 tctctg 17358115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 3476561 - 3476763
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||||    
T  3476561 gaccaagtcccacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgggtttggcgggtcg 3476659  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    ||||||||||| ||||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  3476660 cgaaccgggtcagcggagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaacaagaatcgaatcctcttc 3476759  T
Q  237 tctg 240  Q
    ||||    
T  3476760 tctg 3476763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 3482025 - 3482230
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgg---gctaacgttggcggg 133  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||   |||    || |||||    
T  3482025 gaccaagtcccgcacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtggtgggctgggtttagcggg 3482123  T
Q  134 tcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctc 233  Q
    || ||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3482124 tcacgaaccgggtcggcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctc 3482223  T
Q  234 ttctctg 240  Q
    || ||||    
T  3482224 ttatctg 3482230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 30341585 - 30341771
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||     ||| |||||||||| |||  |||||||||||||||  |||||||||    
T  30341585 gagaccaagtctcacacgttttccacacgcgcaagcttcagctccgcgt-----cgtggtgggttacccttaa-tgggtcgtgggctaagtttggcgggt 30341678  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcga 227  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30341679 cgcgaacagggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggattgggattcttcactccaaaaccgagaatcga 30341771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 4117310 - 4117406
Alignment:
Q  141 ccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttct 237  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117310 ccgggtcggcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttct 4117406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 10321815 - 10321722
Alignment:
Q  145 gtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctc 238  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||| | | |||||||||||||||||||||||| |||||||||||||    
T  10321815 gtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaaccgagaattgaatcctcttctc 10321722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 15762707 - 15762781
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  15762707 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 15762781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 15767868 - 15767942
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  15767868 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 15767942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 17369084 - 17369010
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  17369084 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 17369010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 20090339 - 20090413
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  20090339 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 20090413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 20095464 - 20095538
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  20095464 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 20095538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 55129155 - 55129081
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  55129155 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 55129081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 10321861 - 10321822
Alignment:
Q  201 attcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  10321861 attcttcaccccaaaaccgagaatcgaatcctcttctctg 10321822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 3585083 - 3584878
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3585083 gagaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 3584984  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
    |||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||    
T  3584983 cgcgaaccgggtaggcagagaaaacgaggtcaaatcccctctataaatagagagctcaggatttgcattcttcactccaaaaccgagaatcgaatcctct 3584884  T
Q  235 tctctg 240  Q
    ||||||    
T  3584883 tctctg 3584878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 5730587 - 5730382
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5730587 gagaccaagtctcacacgttttccacacgtgcaagcttcagctacacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 5730488  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
    | |||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  5730487 cacgaaccgggtcggcggagaaaatgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctct 5730388  T
Q  235 tctctg 240  Q
    ||||||    
T  5730387 tctctg 5730382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 48246392 - 48246501
Alignment:
Q  131 gggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatc 230  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  48246392 gggtcgcgaaccgggtcggtggagaaaaccaggtcaaatcctctctataaatagagacctcggaaatgggattcttcactacaaaaccgagaatcgaatc 48246491  T
Q  231 ctcttctctg 240  Q
    ||||||||||    
T  48246492 ctcttctctg 48246501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 27711688 - 27711614
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  27711688 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 27711614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 34317962 - 34318036
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  34317962 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 34318036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 37409267 - 37409341
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  37409267 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 37409341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 48246320 - 48246390
Alignment:
Q  34 tgagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac 107  Q
    ||||||||||||||||    |||||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  48246320 tgagaccaagtctcacg---ttttcacacgcgcaagcttcagctccacgttttcacatcgtgggttaccgttac 48246390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 36684392 - 36684466
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||||||    
T  36684392 aaatcctccttataaattgagagctcgggaatagtattcttgactccaaaactgagaatcgaatactcttctctg 36684466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 37404148 - 37404222
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||| ||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  37404148 aaatcctccttataaattgagagcccgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 37404222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 27716808 - 27716734
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| || |||||||| ||||| ||||    
T  27716808 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgataatcgaatactcttatctg 27716734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 11250853 - 11250927
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| ||||||||| |||| | |||||| |||||||||  ||||||||||| ||||||||||    
T  11250853 aaatcctccttataaattgagagctcgtgaatagtattctttactccaaaattgagaatcgaatactcttctctg 11250927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 110
Target Start/End: Complemental strand, 5725250 - 5725220
Alignment:
Q  80 acgtttccgcgtcgtgggttaccgttacgtg 110  Q
    |||||||||||||||||||||||||||||||    
T  5725250 acgtttccgcgtcgtgggttaccgttacgtg 5725220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 8822 - 9025
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||  |||||||||    
T  8822 gagaccaagtctcacacattttccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgagtcgtgggctaagtttggcgggt 8920  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8921 cgcgaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgggattcttcactccaaaaacgagaatcgaatcctct 9020  T
Q  235 tctct 239  Q
    |||||    
T  9021 tctct 9025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 37489 - 37287
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |  |||||||||||    
T  37489 gaccaagtctcacacgtttttcacacgcggaagcttccgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcg 37391  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37390 cgaaccaggtcggcggagaaaacgaggtcaaatcctctctataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttc 37291  T
Q  237 tctg 240  Q
    ||||    
T  37290 tctg 37287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 41393723 - 41393520
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||||  |||||||||||    
T  41393723 gaccaagtctcacacgttttccacatgcgtaagcttcagctccacgtttccgcgtcgtgggttaccgtttactgggtcgtgggctaagtttggcgggtcg 41393624  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41393623 cgaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 41393524  T
Q  237 tctg 240  Q
    ||||    
T  41393523 tctg 41393520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 53798109 - 53797906
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  53798109 gagaccaagtctcacacgttttccacacgcgcatgcttcagctccacgtttccgcgtcgtgggttaccgttacg--ggtcgtgggctaacgttggcgggt 53798012  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  53798011 cgcgaaccgggtcggcggataaaacgaggtcaaatcccctctataaatagagagctcgggattagcattcttcactccaaaaccgagaatcgaatcctct 53797912  T
Q  235 tctctg 240  Q
    ||||||    
T  53797911 tctctg 53797906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 13711148 - 13710946
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||||    
T  13711148 gaccaagtcccacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgggtttggcgggtcg 13711050  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    ||||||||||| ||||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13711049 cgaaccgggtcagcggagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttc 13710950  T
Q  237 tctg 240  Q
    ||||    
T  13710949 tctg 13710946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 9763633 - 9763835
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||    |||||||||||    
T  9763633 gaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgggtttggcgggtcg 9763731  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    ||||||||||||| ||||||||||| ||  ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  9763732 cgaaccgggtcggaggagaaaacgaagtcgaatcccctctataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatcctcttc 9763831  T
Q  237 tctg 240  Q
    ||||    
T  9763832 tctg 9763835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 13695641 - 13695439
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| |  ||| |||||||    
T  13695641 gaccaagtcccacacgtttttcacacgcgcaagtttccgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgagtttgccgggtcg 13695543  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    |||||||| ||| ||||||||| |||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13695542 cgaaccggttcgacggagaaaatgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatactcttc 13695443  T
Q  237 tctg 240  Q
    ||||    
T  13695442 tctg 13695439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 51019002 - 51019191
Alignment:
Q  36 agaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtc 135  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||      ||    
T  51019002 agaccaagtctcacacgttt--cacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgggtcgtgggctaa-gtt------tc 51019091  T
Q  136 gcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctctt 235  Q
    |||     |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51019092 gcg-----ggtcggcggagaaaacaaggtaaaatcctctctataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctctt 51019186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 47045934 - 47046124
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    ||||||||       
T  47045934 gaccaagtcccgcacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgggtttggcggg--- 47046029  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
             |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47046030 ---------tcggcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttc 47046120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 8985135 - 8985209
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  8985135 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 8985209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 13700875 - 13700801
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  13700875 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 13700801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 21304683 - 21304757
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  21304683 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 21304757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 39999487 - 39999413
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  39999487 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 39999413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 40004445 - 40004371
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  40004445 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 40004371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 54343621 - 54343547
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  54343621 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 54343547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 54348775 - 54348701
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  54348775 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 54348701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 8980015 - 8980089
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| ||||||||| |||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  8980015 aaatcctccttataaattgagagctcgagaatagtattcttcactccaaaactgagaatcgaatactcttctctg 8980089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 21299563 - 21299637
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||||||    
T  21299563 aaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctg 21299637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 36354560 - 36354486
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||| ||||||| |||||||| | ||| | |||||| |||||||||| ||||||||||| ||||||||||    
T  36354560 aaatcctctttataaattgagagctcagaaatagtattctttactccaaaactgagaatcgaatactcttctctg 36354486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 54991841 - 54991767
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| || ||||||||||| | |||||||||| |||||| ||||||||||| ||||||||||    
T  54991841 aaatcctccttataaattgaaagctcgggaatagtattcttcacttcaaaactgagaatcgaatactcttctctg 54991767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 36359736 - 36359672
Alignment:
Q  176 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||| |||||||| ||||| | |||||| |||||||||| ||||||||||| ||||||||||    
T  36359736 tataaattgagagctcaggaatagtattctttactccaaaactgagaatcgaatactcttctctg 36359672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 54990550 - 54990613
Alignment:
Q  176 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctct 239  Q
    ||||||| ||||||||||| || | ||||||||||||||||| ||||||| ||| |||||||||    
T  54990550 tataaattgagagctcgggtatagtattcttcactccaaaactgagaatcaaatactcttctct 54990613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 4205976 - 4205920
Alignment:
Q  107 cgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgagg 163  Q
    |||||||||||||||    || |||||||| ||||||||||||||||||||| ||||    
T  4205976 cgtgggtcgtgggctgggtttagcgggtcgtgaaccgggtcggcggagaaaatgagg 4205920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 42572424 - 42572222
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |  ||| |||||||    
T  42572424 gaccaagtctcacacgtttttcacacgcgcaagcttctgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgagtttgccgggtcg 42572326  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42572325 cgaaccgggtcggcggagaaaacgaggtcgaaacctctctataaatagagaactcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 42572226  T
Q  237 tctg 240  Q
    ||||    
T  42572225 tctg 42572222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 12934876 - 12934674
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |  ||| |||||||    
T  12934876 gaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgccgtgg-ttaccgttacgtgggtcgtgggctgagtttgccgggtcg 12934778  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    ||||||||||||||||||||||||||||  || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12934777 cgaaccgggtcggcggagaaaacgaggtcgaaacatctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 12934678  T
Q  237 tctg 240  Q
    ||||    
T  12934677 tctg 12934674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 16539029 - 16539230
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||  || ||||||||    
T  16539029 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgg-ttaccgttac-tgggtcgtgggctaagtttcgcgggtcg 16539126  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    |||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  16539127 cgaaccaggtcggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttc 16539226  T
Q  237 tctg 240  Q
    ||||    
T  16539227 tctg 16539230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 16626633 - 16626432
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||  || ||||||||    
T  16626633 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgg-ttaccgttac-tgggtcgtgggctaagtttcgcgggtcg 16626536  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    |||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  16626535 cgaaccaggtcggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttc 16626436  T
Q  237 tctg 240  Q
    ||||    
T  16626435 tctg 16626432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 19309227 - 19309429
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||||    
T  19309227 gaccaagtcccgcacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgggtttggcgggtcg 19309325  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    ||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19309326 cgagccgggtcggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcaaatcctcttc 19309425  T
Q  237 tctg 240  Q
    ||||    
T  19309426 tctg 19309429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 57 - 240
Target Start/End: Original strand, 21080675 - 21080857
Alignment:
Q  57 tcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaa 156  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21080675 tcacacgcgcaagcttcagttccacgtttccacgtcgtgggttaccgttgc-tgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggtggagaa 21080773  T
Q  157 aacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    |||||||| |||||| ||||||||||||||||||||||| | | |||||||||| |||||| ||||||||||||||||||||||    
T  21080774 aacgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcacttcaaaactgagaatcgaatcctcttctctg 21080857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 17495840 - 17495680
Alignment:
Q  79 cacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctat 178  Q
    ||||||||||||| |||| ||||||||| |||||||||||||| |  |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||    
T  17495840 cacgtttccgcgtggtgg-ttaccgttatgtgggtcgtgggctgagtttggcgggtcgcgaaccgggtcggcggagaaaacgaggaaaattcccctctat 17495742  T
Q  179 aaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  17495741 aaatagagagctcgggaatgggattctttactccaaaaccgagaattgaatcctcttctctg 17495680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 17557374 - 17557534
Alignment:
Q  79 cacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctat 178  Q
    ||||||||||||| |||| ||||||||| |||||||||||||| |  |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||    
T  17557374 cacgtttccgcgtggtgg-ttaccgttatgtgggtcgtgggctgagtttggcgggtcgcgaaccgggtcggcggagaaaacgaggaaaattcccctctat 17557472  T
Q  179 aaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  17557473 aaatagagagctcgggaatgggattctttactccaaaaccgagaattgaatcctcttctctg 17557534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 240
Target Start/End: Complemental strand, 43893298 - 43893146
Alignment:
Q  87 cgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagag 186  Q
    |||||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||    
T  43893298 cgcgtcgtgg-ttaccgttacgtgggtcgtgggctgggtttggcgggtcgcgaaccgggtcggcggagaaaacgaggaaaattccccgctataaatagag 43893200  T
Q  187 agctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43893199 agctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctctg 43893146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 47176854 - 47176968
Alignment:
Q  126 ttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatc 225  Q
    |||||||||||||||||||||||||||||||||| ||||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  47176854 ttggcgggtcgcgaaccgggtcggcggagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgagattcttcactccaaaaccgataatc 47176953  T
Q  226 gaatcctcttctctg 240  Q
    |||||||||||||||    
T  47176954 gaatcctcttctctg 47176968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 2234332 - 2234448
Alignment:
Q  131 gggtcgcgaaccgggtcggcggagaaaacgag-------gtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaa 223  Q
    ||||||||||||||||||||||||||||||||       || |||||| ||||||||||||||||||||||| | | |||||||||||||||||||||||    
T  2234332 gggtcgcgaaccgggtcggcggagaaaacgagaaacgaggtcaaatcccctctataaatagagagctcgggattagtattcttcactccaaaaccgagaa 2234431  T
Q  224 tcgaatcctcttctctg 240  Q
    |||||||||||||||||    
T  2234432 tcgaatcctcttctctg 2234448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 32212341 - 32212421
Alignment:
Q  40 caagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggct 121  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  32212341 caagtctcacacgttttccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgggtcgagggct 32212421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 32212419 - 32212471
Alignment:
Q  188 gctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212419 gctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 32212471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 33238420 - 33238346
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  33238420 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 33238346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 33243597 - 33243523
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  33243597 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 33243523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 47994218 - 47994144
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  47994218 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 47994144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 47999393 - 47999319
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  47999393 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 47999319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 13355 - 13557
Alignment:
Q  37 gaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcg 136  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||||    
T  13355 gaccaagtcccacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgggtttggcgggtcg 13453  T
Q  137 cgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 236  Q
    ||||||||||| ||||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13454 cgaaccgggtcagcggagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttc 13553  T
Q  237 tctg 240  Q
    ||||    
T  13554 tctg 13557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 18835 - 19010
Alignment:
Q  64 cgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgagg 163  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||| |||||||||||| |||||||||||| |    
T  18835 cgcaagcttccgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgggtttggcgggtcacgaaccgggtcgacggagaaaacgaag 18933  T
Q  164 taaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    |  ||||| ||||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||| ||||||||||    
T  18934 tcgaatcccctctataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctg 19010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 4163203 - 4163395
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         
T  4163203 gagaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgggtcgtgggctaacgttgg----- 4163296  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
           |||||||||||||||||| |||| |||||| ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  4163297 -------cgggtcggcggagaaaacaaggttaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctct 4163389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 35 - 237
Target Start/End: Original strand, 28751364 - 28751544
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||                      |||||||| || ||||   ||||    
T  28751364 gagaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccgc----------------------gtcgtgggttaccgttactgggt 28751441  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
    |||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28751442 cgcgaaccaggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctct 28751541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 42723128 - 42723202
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  42723128 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 42723202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 42728297 - 42728371
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  42728297 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 42728371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 44754283 - 44754355
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctc 238  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||    
T  44754283 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctc 44754355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 44759449 - 44759521
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctc 238  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||    
T  44759449 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctc 44759521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 40392684 - 40392610
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| || |||||||    
T  40392684 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatacttttctctg 40392610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 40519987 - 40519925
Alignment:
Q  177 ataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctct 239  Q
    |||||| |||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||    
T  40519987 ataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctct 40519925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 44096720 - 44096646
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | |||||| |||||||||| ||||||||||| ||||||||||    
T  44096720 aaatcctccttataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctg 44096646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 40518213 - 40518275
Alignment:
Q  177 ataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctct 239  Q
    |||||| ||||||||| |||| | ||||||||||||||||| ||||||||||| |||||||||    
T  40518213 ataaattgagagctcgtgaatagtattcttcactccaaaactgagaatcgaatactcttctct 40518275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 36 - 239
Target Start/End: Complemental strand, 36254309 - 36254114
Alignment:
Q  36 agaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtc 135  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||       || |  ||||||||||    
T  36254309 agaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtgg-ttaccgttacgtggg-------ctgagtttggcgggtc 36254218  T
Q  136 gcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctctt 235  Q
    |||| ||||||||| |||||||| |||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36254217 gcgagccgggtcggtggagaaaatgaggaaaattcccctctataaatagagagcttgggaatgggattcttcactccaaaaccgagaatcgaatcctctt 36254118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 1413710 - 1413870
Alignment:
Q  79 cacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctat 178  Q
    ||||||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||| || ||||||||| |||||| ||||||    
T  1413710 cacgtttccgcgtcgtgggttaccgttat-tgggtcgtgggctaagtttggcgggtcgcgaaccgggtcggcgaagtaaacgaggtcaaatcccctctat 1413808  T
Q  179 aaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1413809 aaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctg 1413870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 24776452 - 24776627
Alignment:
Q  64 cgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgagg 163  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||| |||||||||||| |||||||||||| |    
T  24776452 cgcaagcttccgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgggtttggcgggtcacgaaccgggtcgacggagaaaacgaag 24776550  T
Q  164 taaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    |  ||||| ||||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||| ||||||||||    
T  24776551 tcgaatcccctctataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctg 24776627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 26709563 - 26709383
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||                        
T  26709563 gagaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttctgcgtcgtgggttaccgttgc-tgggtc-------------------- 26709485  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
     ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | | ||||||||||||||||| |||||| |||||||||    
T  26709484 -gcgaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctct 26709386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 26979297 - 26979117
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||                        
T  26979297 gagaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttctgcgtcgtgggttaccgttgc-tgggtc-------------------- 26979219  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctct 234  Q
     ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | | ||||||||||||||||| |||||| |||||||||    
T  26979218 -gcgaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctct 26979120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 24770997 - 24771172
Alignment:
Q  64 cgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgagg 163  Q
    |||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||| | |||||||||| | |||||||||| |    
T  24770997 cgcaagctttcgctccacgtttccgcgtcgtgg-ttaccgttacgtgggtcgtgggctgggtttggcgggtcacaaaccgggtcgacagagaaaacgaag 24771095  T
Q  164 taaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    |  ||||| ||||||||||||||||||| ||| ||| |||||| ||||||||||| |||||| ||  ||||||||||    
T  24771096 tcgaatcccctctataaatagagagctcaggattggtattctttactccaaaaccaagaatcaaacactcttctctg 24771172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 1413444 - 1413512
Alignment:
Q  79 cacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcg 148  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  1413444 cacgtttccgcgtcgtgggttaccgttac-tgggtcgtgggctaagtttggcgggtcgcgaaccgggtcg 1413512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 17505318 - 17505244
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  17505318 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 17505244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 17510423 - 17510349
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  17510423 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 17510349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 42019938 - 42019864
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  42019938 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 42019864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 41858941 - 41858877
Alignment:
Q  176 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  41858941 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 41858877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 42024718 - 42024644
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||  ||||||||||| ||||||||||    
T  42024718 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaattgagaatcgaatactcttctctg 42024644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 1413507 - 1413557
Alignment:
Q  110 gggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacg 160  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  1413507 gggtcgtgggctaagtttggcgggtcgcgaaccgggtcggcggagtaaacg 1413557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 43580025 - 43579951
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||| ||||| ||||||| ||||||||||| ||||||||||    
T  43580025 aaatcctccttataaattgagagctcgggaatagtatttttcacaccaaaactgagaatcgaatactcttctctg 43579951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 35 - 191
Target Start/End: Original strand, 17955447 - 17955602
Alignment:
Q  35 gagaccaagtctcacacgtttttcacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggt 134  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||| ||    
T  17955447 gagaccaagtctcacacgttttccacacgcgcaagcttcagctccacatttccgcgtcgtgggttaccgttac-tgggtcatgggctaacgttcgcgagt 17955545  T
Q  135 cgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctc 191  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  17955546 cgcgaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctc 17955602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 21642941 - 21643081
Alignment:
Q  96 ggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcggga 195  Q
    |||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  21642941 ggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagacctcggga 21643039  T
Q  196 atgggattcttcactccaaaaccgagaatcgaatcctcttct 237  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21643040 atgggattcttcactccaaaaccgagaatcgaatcctcttct 21643081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 21643316 - 21643456
Alignment:
Q  96 ggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcggga 195  Q
    |||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  21643316 ggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagacctcggga 21643414  T
Q  196 atgggattcttcactccaaaaccgagaatcgaatcctcttct 237  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21643415 atgggattcttcactccaaaaccgagaatcgaatcctcttct 21643456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 21641441 - 21641581
Alignment:
Q  96 ggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcggga 195  Q
    |||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  21641441 ggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagacctcggga 21641539  T
Q  196 atgggattcttcactccaaaaccgagaatcgaatcctcttct 237  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  21641540 atgggattcttcactccaaaatcgagaatcgaatcctcttct 21641581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 21641816 - 21641956
Alignment:
Q  96 ggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcggga 195  Q
    |||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  21641816 ggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagacctcggga 21641914  T
Q  196 atgggattcttcactccaaaaccgagaatcgaatcctcttct 237  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  21641915 atgggattcttcactccaaaatcgagaatcgaatcctcttct 21641956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 21642191 - 21642331
Alignment:
Q  96 ggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcggga 195  Q
    |||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  21642191 ggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagacctcggga 21642289  T
Q  196 atgggattcttcactccaaaaccgagaatcgaatcctcttct 237  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  21642290 atgggattcttcactccaaaatcgagaatcgaatcctcttct 21642331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 21642566 - 21642706
Alignment:
Q  96 ggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcggga 195  Q
    |||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  21642566 ggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagacctcggga 21642664  T
Q  196 atgggattcttcactccaaaaccgagaatcgaatcctcttct 237  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  21642665 atgggattcttcactccaaaatcgagaatcgaatcctcttct 21642706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 24885118 - 24884990
Alignment:
Q  112 gtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactc 211  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  24885118 gtcgtgggctaagtttggtgggtcgcgaaccgggtcggcggagaaaacgaggtcaaatcctctctataaatagagagctcgggaatggaattcttcactc 24885019  T
Q  212 caaaaccgagaatcgaatcctcttctctg 240  Q
    |||||||||||||||||||||||||||||    
T  24885018 caaaaccgagaatcgaatcctcttctctg 24884990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 21643770 - 21643899
Alignment:
Q  111 ggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcact 210  Q
    |||||||||||||  || || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  21643770 ggtcgtgggctaagtttcgcaggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagacctcgggaatgggattcttcact 21643869  T
Q  211 ccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||||||||||||||||||||||||    
T  21643870 ccaaaaccgagaatcgaatcctcttctctg 21643899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 43998955 - 43999048
Alignment:
Q  147 cggcggagaaaacgaggtaaaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| |   |||||| |||| ||||| ||||||||||||||||||||||    
T  43998955 cggcggagaaaacgaggtgaaatcccctctataaatagagagctcgggatttacattctttactctaaaactgagaatcgaatcctcttctctg 43999048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 42514180 - 42514238
Alignment:
Q  182 tagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42514180 tagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctg 42514238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 32010944 - 32010870
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  32010944 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 32010870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 32016118 - 32016044
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  32016118 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 32016044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 2165543 - 2165616
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctct 239  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||  ||||||| ||| |||||||||    
T  2165543 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaattgagaatcaaatgctcttctct 2165616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 3928 - 3854
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  3928 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 3854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 3442 - 3368
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  3442 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 3368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 81093 - 81167
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  81093 aaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 81167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 26791 - 26717
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||| ||||||| ||||||||||| ||||| ||||    
T  26791 aaatcctccttataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctg 26717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 31963 - 31889
Alignment:
Q  166 aaatcctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 240  Q
    ||||||||  ||||||| |||||||||||||| | ||||||||| ||||||| ||||||||||| ||||| ||||    
T  31963 aaatcctccttataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctg 31889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University