View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_27 (Length: 250)
Name: NF9448_low_27
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 15171515 - 15171755
Alignment:
| Q |
1 |
caggttggttaatcttgttggtttcaccaatgattctaaagataggcttttggttgttgagtttatgtgtaatggtacactttttgatgttcttcattct |
100 |
Q |
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| T |
15171515 |
caggttggttaatcttgttggtttcaccaatgattctaaagataggcttttggttgttgagtttatgtgtaatggtacactttttgatgttcttcattct |
15171614 |
T |
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| Q |
101 |
tcttcaagaaatcttaactggagtagaagaattcgtttggctttgcaaactgctaaggctattgatattcttcattcatcaaacccacctgttattcata |
200 |
Q |
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| T |
15171615 |
tcttcaagaaatcttaactggggtagaagaattcgtttggctttgcaaactgctaaggctattgatattcttcattcatcaaacccacctgttattcata |
15171714 |
T |
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| Q |
201 |
gagatattaaatctgctaatgttcttattgatcagtattat |
241 |
Q |
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| T |
15171715 |
gagatattaaatctgctaatgttcttattgatcagaattat |
15171755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 3123109 - 3123303
Alignment:
| Q |
42 |
ataggcttttggttgttgagtttatgtgtaatggtacactttttgatgttcttcattcttcttcaagaaatcttaa-ctggagtagaagaattcgtttgg |
140 |
Q |
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| T |
3123109 |
ataggcttttggttgttgattttatgtgtaatggtacactttttgatgttcatcattcttctttaagaaatcttaaactggggtagaagaatttgtttga |
3123208 |
T |
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| Q |
141 |
ctttgcaaactgctaaggctattgatattcttcattcatcaaacccacctgttattcatagagatattaaatctgctaatgttcttattgatcag |
235 |
Q |
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| T |
3123209 |
ctttgcaaactgctaaggctattgatgttcttcattcatcaaacccacttgtgattcatagagatattaaatctgctaatgttcttattgatcag |
3123303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 3229176 - 3229369
Alignment:
| Q |
42 |
ataggcttttggttgttgagtttatgtgtaatggtacactttttgatgttcttcattcttcttcaagaaatcttaactggagtagaagaattcgtttggc |
141 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||| |
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| T |
3229176 |
ataggcttttggttgttgattttatgtgtaatggtacacttttttatgttcttcattcttcttcatgaaatcttaaatggggtagaagaatttgtttggc |
3229275 |
T |
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| Q |
142 |
tttgcaaactgctaaggctattgatattcttcattcatcaaacccacctgttattcatagagatattaaatctgctaatgttcttattgatcag |
235 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3229276 |
tttgcaaactgctaaggctattgatgttcttcattcatcaaacccacttgcgattcatagagatattaaatatgctaatgttcttattgatcag |
3229369 |
T |
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