View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_28 (Length: 247)
Name: NF9448_low_28
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 28966460 - 28966630
Alignment:
| Q |
61 |
tctttctcttatatttt-ttctaggcctgcctctacttctagcgatttgaacaccctctatccggtttactcttcttactataaaatccacaacaggcct |
159 |
Q |
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| T |
28966460 |
tctttctcttatatttttttctaggcctgcctctacttctagcaatttgaacaccctccatccggtctactcttcttactataaaatccacaacaggcct |
28966559 |
T |
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| Q |
160 |
tctctctacgtgccgagaccagctaagatgggtttctgccatattttcaacgatatattctacctcaacac |
230 |
Q |
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| T |
28966560 |
tctctctacgtgccgagaccagctaagataggtttctgccatattttcaacgatatatgctacctcaacac |
28966630 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 38178383 - 38178467
Alignment:
| Q |
63 |
tttctcttatattttttctaggcctgcctctacttctagcgatttgaacaccctctatccggtttactcttcttactataaaatc |
147 |
Q |
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| T |
38178383 |
tttctcttatagtttttctaggtcttcctctacctctagcgatttgactatcctccatctgatctactctccttactacaaaatc |
38178467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 40938084 - 40938036
Alignment:
| Q |
61 |
tctttctcttatattttttctaggcctgcctctacttctagcgatttga |
109 |
Q |
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|||||||||||||||||||||||| || ||||| | |||| |||||||| |
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| T |
40938084 |
tctttctcttatattttttctaggtcttcctctgcctctaacgatttga |
40938036 |
T |
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