View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9448_low_31 (Length: 243)

Name: NF9448_low_31
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9448_low_31
NF9448_low_31
[»] chr1 (8 HSPs)
chr1 (19-215)||(28239340-28239536)
chr1 (44-191)||(28231672-28231819)
chr1 (59-149)||(24621575-24621665)
chr1 (59-149)||(23787210-23787300)
chr1 (64-149)||(28326517-28326602)
chr1 (103-174)||(6326514-6326585)
chr1 (65-149)||(47569320-47569404)
chr1 (110-177)||(14508590-14508657)
[»] chr3 (1 HSPs)
chr3 (56-156)||(47924700-47924800)
[»] chr5 (2 HSPs)
chr5 (110-149)||(1718125-1718164)
chr5 (105-141)||(28804227-28804263)
[»] chr2 (1 HSPs)
chr2 (106-137)||(16375422-16375453)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 28239340 - 28239536
Alignment:
Q  19 attggaggcatcaagaaccgtggcctctccaacccctcctactttagttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaa 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28239340 attggaggcatcaagaaccgcggcctctccaacccctcctactttagttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaa 28239439  T
Q  119 ggtggtgtcaaacctaatgttgcttgttatcgctcagtttatgatggactatacaaaggccaaggtggatcaaaaagcaaccttatgaataagattg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28239440 ggtggtgtcaaacctaatgttgcttgttatcgctcagtttatgatggactatacaaaggccaaggtggatcaaaaagcaaccttatgaataagattg 28239536  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 44 - 191
Target Start/End: Original strand, 28231672 - 28231819
Alignment:
Q  44 tctccaacccctcctactttagttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaaggtggtgtcaaacctaatgttgctt 143  Q
    |||||||||| ||||||||||||||||||| |||| |||| |||||||| |||||| |||||| |||||||||||||||||||||||||||| ||||||     
T  28231672 tctccaacccatcctactttagttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgcta 28231771  T
Q  144 gttatcgctcagtttatgatggactatacaaaggccaaggtggatcaa 191  Q
    |||| | |||||||  |||||||||||||||| |||||||||||||||    
T  28231772 gttaccactcagttattgatggactatacaaaagccaaggtggatcaa 28231819  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 24621665 - 24621575
Alignment:
Q  59 actttagttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatc 149  Q
    |||||||||||||||| ||| |||||||||| || |||||  ||| || |||||||||||| |||||||||||||||||||||||||||||    
T  24621665 actttagttaccgaacaagaggtgaaatctgttaaaagtgcagcaactttgatgataaaagctggtgtcaaacctaatgttgcttgttatc 24621575  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 23787210 - 23787300
Alignment:
Q  59 actttagttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatc 149  Q
    |||||||||||||||| ||| |||||||||| || |||||  ||| || || ||||||||| |||||||||||||||||||||||||||||    
T  23787210 actttagttaccgaacaagaggtgaaatctgttaaaagtgcagcaactttggtgataaaagctggtgtcaaacctaatgttgcttgttatc 23787300  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 28326517 - 28326602
Alignment:
Q  64 agttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatc 149  Q
    |||||||||| |||| ||||||||||||| |||||| | |||||| ||||||||||||||| ||| ||||||||||||| ||||||    
T  28326517 agttaccgaaagagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatc 28326602  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 6326585 - 6326514
Alignment:
Q  103 agctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatcgctcagtttatgatggactatacaa 174  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||| |||||||  ||||||| |||||||    
T  6326585 agctgtgatgataaaaggcggtctcaaacctaatgttgctagttatcactcagttgctgatggaatatacaa 6326514  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 47569320 - 47569404
Alignment:
Q  65 gttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatc 149  Q
    |||||||||| ||| ||||||||||||| | |||  || ||| |||||||||||||| ||||||||||||||| |||| ||||||    
T  47569320 gttaccgaacaagaggtgaaatctgctaaatgtgcagctgctttgatgataaaaggtagtgtcaaacctaatgctgctagttatc 47569404  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 14508657 - 14508590
Alignment:
Q  110 atgataaaaggtggtgtcaaacctaatgttgcttgttatcgctcagtttatgatggactatacaaagg 177  Q
    ||||||||||||||||||||||||| ||||||| ||| || ||| ||   ||||| ||||||||||||    
T  14508657 atgataaaaggtggtgtcaaacctattgttgctagttttcactcggtgattgatgaactatacaaagg 14508590  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 47924800 - 47924700
Alignment:
Q  56 cctactttagttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatcgctcag 155  Q
    |||||||||||||| ||| |||| || |||  ||||| || ||| |  ||||||||| ||||| | ||||||||||||||||||||  |||||| |||||    
T  47924800 cctactttagttactgaaggagaggttaaagatgctaaaactgtagtggctgtgatggtaaaatgcggtgtcaaacctaatgttgccagttatcactcag 47924701  T
Q  156 t 156  Q
    |    
T  47924700 t 47924700  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 1718125 - 1718164
Alignment:
Q  110 atgataaaaggtggtgtcaaacctaatgttgcttgttatc 149  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  1718125 atgataaaaggtggtgtcaaacctattgttgctggttatc 1718164  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 28804263 - 28804227
Alignment:
Q  105 ctgtgatgataaaaggtggtgtcaaacctaatgttgc 141  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  28804263 ctgttatgataaaaagtggtgtcaaacctaatgttgc 28804227  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 137
Target Start/End: Original strand, 16375422 - 16375453
Alignment:
Q  106 tgtgatgataaaaggtggtgtcaaacctaatg 137  Q
    ||||||||||||||||||||||||||||||||    
T  16375422 tgtgatgataaaaggtggtgtcaaacctaatg 16375453  T

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