View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_33 (Length: 241)
Name: NF9448_low_33
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 3685914 - 3686074
Alignment:
| Q |
67 |
atataagatgagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggt |
166 |
Q |
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| T |
3685914 |
atataagaggagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggt |
3686013 |
T |
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| Q |
167 |
tcttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcct |
227 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3686014 |
tcttttaacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcct |
3686074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 3693681 - 3693841
Alignment:
| Q |
67 |
atataagatgagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggt |
166 |
Q |
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| T |
3693681 |
atataagacgcgagggccgaaattaaaggataatgatatttcta-cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggt |
3693779 |
T |
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| Q |
167 |
t-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcct |
227 |
Q |
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| T |
3693780 |
ttcttataacacatacacactgtgatttccgctcattcctgaaccatacactgcttcttcct |
3693841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 3679151 - 3679309
Alignment:
| Q |
67 |
atataagatgagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggt |
166 |
Q |
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| T |
3679151 |
atataagaggcgagggccgaaatcaaaggataatgatatttgta-cgaagagtattcataaaaaacgcatcacgaattgatttggcagcaagtgattggt |
3679249 |
T |
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| Q |
167 |
t-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttc |
225 |
Q |
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| T |
3679250 |
ttcttataacacatacacgctgtgatttccgctcattcctgaactatacactacttcttc |
3679309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 3703042 - 3703107
Alignment:
| Q |
5 |
tagattattctatttttatgcataccaaaaaggttattcttattttaattgaattatagattatat |
70 |
Q |
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| T |
3703042 |
tagattattctatttttatgcataccaaaaaggttattcttattttaattgaattatagataatat |
3703107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 3693269 - 3693334
Alignment:
| Q |
5 |
tagattattctatttttatgcataccaaaaaggttattcttattttaattgaattatagattatat |
70 |
Q |
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| T |
3693269 |
tagattatgctatttttacgcataccaaaaaggttattcttattttaattgaattatagagtatat |
3693334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 3700737 - 3700793
Alignment:
| Q |
10 |
tattctatttttatgcataccaaaaaggttattcttattttaattgaattatagatt |
66 |
Q |
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| T |
3700737 |
tattctatttttatgtataccaataaggttattcttattttaattgaattatagatt |
3700793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 3675510 - 3675571
Alignment:
| Q |
90 |
taaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtgg |
151 |
Q |
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| T |
3675510 |
taaaggttaatgatatttgtagcgaagaatatagatcacgaacgcatcacaaactgatgtgg |
3675571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 3685590 - 3685619
Alignment:
| Q |
5 |
tagattattctatttttatgcataccaaaa |
34 |
Q |
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| T |
3685590 |
tagattattctatttttatgcataccaaaa |
3685619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 1287457 - 1287426
Alignment:
| Q |
32 |
aaaaggttattcttattttaattgaattatag |
63 |
Q |
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| T |
1287457 |
aaaaggttattcttattttaattgaattatag |
1287426 |
T |
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