View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_37 (Length: 240)
Name: NF9448_low_37
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_37 |
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| [»] scaffold0903 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: scaffold0903 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0903
Description:
Target: scaffold0903; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 1598 - 1813
Alignment:
| Q |
13 |
cttcttcttcttgtctgttacagttgtctcctgagttaggtcaccaggtccattgtctatgtctatgtctatgtctatgtcaataggatttttctccatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||| |
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| T |
1598 |
cttcttcttcttgtctgttacagttgtctcctgagttaggtcaccaggtctattgtctatgtccatgtc------------aatagaatttttctccatt |
1685 |
T |
|
| Q |
113 |
gttcctggtgctccaagctttggttgaggaccaaagtagcaggttcttccacttcttctaagtctactttggttgagctttggtaccccagcagatgatc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1686 |
gttcctggtgctccaagctttggttgaggaccaaagtagcaggttcttccacttcttctaagtttactttggttgagctttggtaccccagcagatgatc |
1785 |
T |
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| Q |
213 |
tttctgtagatgtcacacaccttacccc |
240 |
Q |
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|||||||||||||| ||||||||||||| |
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| T |
1786 |
tttctgtagatgtctcacaccttacccc |
1813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 21718048 - 21718257
Alignment:
| Q |
13 |
cttcttcttcttgtctgttacagttgtctcctgagttaggtcaccaggtccattgtctatgtctatgtctatgtctatgtcaataggatttttctccatt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21718048 |
cttcttcttcttgtctgttacagttgtctcctgagttaggtcaccaggtccattgtc------------------tatgtcaataggatttttctccatt |
21718129 |
T |
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| Q |
113 |
gttcctggtgctccaagctttggttgaggaccaaagtagcaggttcttccacttcttctaagtctactttggttgagctttggtaccccagcagatgatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21718130 |
gttcctggtgctccaagctttggttgaggaccaaagtagcaggttcttccacttcttctaagtctactttggttgagctttggtaccccagcagatgatc |
21718229 |
T |
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| Q |
213 |
tttctgtagatgtcacacaccttacccc |
240 |
Q |
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|||||||||||||| ||||||||||||| |
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| T |
21718230 |
tttctgtagatgtctcacaccttacccc |
21718257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 20655544 - 20655392
Alignment:
| Q |
88 |
tatgtcaataggatttttctccattgttcctggtgctccaagctttggttgaggaccaaagtagcaggttcttccacttcttctaagtctactttggttg |
187 |
Q |
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|||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||| |
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| T |
20655544 |
tatgtcaataggatttgtctccattgttcttggtgatccaaactttggttgaggaccaaagtaacatgttcttccacttcttctaagtctgcttaggttg |
20655445 |
T |
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| Q |
188 |
agctttggtaccccagcagatgatctttctgtagatgtcacacaccttacccc |
240 |
Q |
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|||||||||||||||| ||||||| || || ||| ||| ||||||||||||| |
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| T |
20655444 |
agctttggtaccccaggagatgattttcatgcagaagtctcacaccttacccc |
20655392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 34586791 - 34586751
Alignment:
| Q |
134 |
ggttgaggaccaaagtagcaggttcttccacttcttctaag |
174 |
Q |
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||||| |||||||||||||||||||||||||| |||||||| |
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| T |
34586791 |
ggttgtggaccaaagtagcaggttcttccactccttctaag |
34586751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 30966689 - 30966649
Alignment:
| Q |
134 |
ggttgaggaccaaagtagcaggttcttccacttcttctaag |
174 |
Q |
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||||| |||||||||||||||||||||||||| |||||||| |
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| T |
30966689 |
ggttgtggaccaaagtagcaggttcttccactccttctaag |
30966649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 429547 - 429579
Alignment:
| Q |
60 |
gtccattgtctatgtctatgtctatgtctatgt |
92 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
429547 |
gtcctttgtctatgtctatgtctatgtctatgt |
429579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 1003 - 971
Alignment:
| Q |
60 |
gtccattgtctatgtctatgtctatgtctatgt |
92 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
1003 |
gtcctttgtctatgtctatgtctatgtctatgt |
971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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