View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_38 (Length: 240)
Name: NF9448_low_38
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 15521034 - 15521251
Alignment:
| Q |
20 |
taactaaaaggaatccatttcaactatgaaaaatatgatagtttttaccaaaatatactgttccaaagcccccttttcccagtccattcgatggatcaaa |
119 |
Q |
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| T |
15521034 |
taactaaaaggaatccatttcaattatgaaaaatatgatagtttttaccaaaatacactgttccaaagcccccttttcccagtccattcgatggatcaaa |
15521133 |
T |
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| Q |
120 |
gtggtttgtggcttcttcaagctcactataagtgaaaagttgcaccccaaagtgttgacttcccctctcaagatcccttgaagatgaaacataagggagg |
219 |
Q |
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| T |
15521134 |
gtggtttgtggcttcttcaagctcactataagtaaaaagttgcaccccaaagtgttgacttccccactcaagatccgttgaagacgaaacataagggagg |
15521233 |
T |
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| Q |
220 |
ctgtgagactttaagtat |
237 |
Q |
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| T |
15521234 |
ctgtgagactttaagtat |
15521251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 15495140 - 15494971
Alignment:
| Q |
24 |
taaaaggaatccatttcaactatgaaaaatatgatagtttttaccaaaatatactgttccaaagcccccttttcccagtccattcgatggatcaaagtgg |
123 |
Q |
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||||||||||||||||||| |||| || |||| ||||||||||| ||||| ||||||||||||||||||||||| | ||| || ||||||||||||| | |
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| T |
15495140 |
taaaaggaatccatttcaaatatgcgaa-tatgctagtttttaccgaaatagactgttccaaagcccccttttcctaatcctttggatggatcaaagtag |
15495042 |
T |
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| Q |
124 |
tttgtggcttcttcaagctcactataagtgaaaagttgcaccccaaagtgttgacttcccctctcaagatc |
194 |
Q |
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| T |
15495041 |
tttgtggcttcttcaagctcactataagtgaaatgttgcactccaatgttttgacttcccctctcgagatc |
15494971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 31017089 - 31016971
Alignment:
| Q |
64 |
ttaccaaaatatactgttccaaagcccccttttcccagtccattcgatggatcaaagtggtttgtggcttcttcaagctcactataagtgaaaagttgca |
163 |
Q |
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||||||||||| ||||| ||||||||||||| ||| ||| | || || |||||||||| |||||||||||||| ||||||||||||||| ||| ||||| |
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| T |
31017089 |
ttaccaaaatacactgtcccaaagcccccttctccgagttctttagacggatcaaagttgtttgtggcttcttgaagctcactataagtaaaagcttgca |
31016990 |
T |
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| Q |
164 |
ccccaaagtgttgacttcc |
182 |
Q |
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| T |
31016989 |
ctccaaagttttggcttcc |
31016971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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