View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_39 (Length: 239)
Name: NF9448_low_39
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25868008 - 25867784
Alignment:
| Q |
1 |
aactaataattgtcgaaagaaaacacatgattactagtgttaattaatgtgaagtgtcaaaccttaatatgaacttcaaaacacagagtgttatagcaca |
100 |
Q |
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| T |
25868008 |
aactaataattgtcgaaagaaaacacatgattactagtgttaattaatgtgaagtgtcaaaccttaatatgaacttcaaaacacagagtgttatagcaca |
25867909 |
T |
|
| Q |
101 |
aaagacatcatagtgatagagagaagatgaaagacgagttagaaagaatgcatttcagaaacaataaatataaacttcctgcgacggtgctgtgtcatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25867908 |
aaagacatcatagtgatagagagaagatgaaagacgagttagaaagaatgcatttcagaaacaataaatataaacttcctgcgacggtgctgtgtcatgg |
25867809 |
T |
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| Q |
201 |
caagcattgcagtcatttgttcatg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
25867808 |
caagcattgcagtcatttgttcatg |
25867784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 52906290 - 52906331
Alignment:
| Q |
114 |
tgatagagagaagatgaaagacgagttagaaagaatgcattt |
155 |
Q |
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| T |
52906290 |
tgatagagagaagatggaagacgagttttaaagaatgcattt |
52906331 |
T |
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