View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9448_low_4 (Length: 487)

Name: NF9448_low_4
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9448_low_4
NF9448_low_4
[»] chr7 (1 HSPs)
chr7 (37-418)||(22385159-22385543)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 37 - 418
Target Start/End: Original strand, 22385159 - 22385543
Alignment:
Q  37 aaataaagaaaatgtttgatctgtgtgtgtttttgtggtaaaatatttatgtattcatcaaagatccatttgaacaatgttttattatttcttattaagt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22385159 aaataaagaaaatgtttgatctgtgtgtgtttttgtggtaaaaaatttatgtattcatcaaagatccatttgaacaatgttt-attatttcttattaagt 22385257  T
Q  137 ggnnnnnnnnnnnnnnnnnnnnnnnnngaatattgttgttataatctttaattgatttaatatgactgtgtatggataatgatgatctttatgtaacaat 236  Q
    ||                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22385258 ggttttttccagtgatttttgttttttgaatattgttgttataatctttaattgatttaatatgactgtgtatggataatgatgatctttatgtaacaat 22385357  T
Q  237 tgtggattttgtttgtttgtgaaaatcaactaacaatacttta----tttatttgattttatttttgtcacttttgaaaatattgaagggtatgtacctg 332  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22385358 tgtggattttgtttgtttgtgaaaatcaactaacaatactttatttatttatttgattttatttttgtcacttttgaaaatattgaagggtatgtatctg 22385457  T
Q  333 cttcagattcaaacaggataacagtgtcttcaacatggggtgaatacttgttcttctaatgtccatttacatgtaagttttcaata 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22385458 cttcagattcaaacaggataacagtgtcttcaacatggggtgaatagttgttcttctaatgtccatttacatgtaagttttcaata 22385543  T

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