View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_40 (Length: 239)
Name: NF9448_low_40
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4903374 - 4903596
Alignment:
| Q |
1 |
aaaaccgatctttgttctctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaac |
100 |
Q |
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| T |
4903374 |
aaaaccgatctttgttctctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaac |
4903473 |
T |
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| Q |
101 |
atcacatttatctgtgaatgtattggttcggacacactctggcgccatgtatccatggccagtcgaacctgtcaacaaaaccattttgtgtaacttaact |
200 |
Q |
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| T |
4903474 |
atcacatttatctgtgaatgtattggttcggacacactctggcgccatgtatccatggccagtcgaacctgtcaataaaaccattttgtgtaacttaacg |
4903573 |
T |
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| Q |
201 |
tcagaaattatcgacaaaacttg |
223 |
Q |
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| T |
4903574 |
tcagaaattatcgacaaaacttg |
4903596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 5822861 - 5822739
Alignment:
| Q |
29 |
catcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacatttatctgtgaatgtattggtt |
128 |
Q |
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||||||||||||||| |||| || || ||||| | | || |||||| ||||||||||||||| || ||||||||||||||||||||||| ||||||||| |
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| T |
5822861 |
catcttatcaaagatggtatatttgtagtttgtacatactgcttcaagtagaaccataccaaaggagtaaacatcacatttatctgtgaaagtattggtt |
5822762 |
T |
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| Q |
129 |
cggacacactctggcgccatgta |
151 |
Q |
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| T |
5822761 |
cggacatactctggtgccatgta |
5822739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 4906768 - 4906901
Alignment:
| Q |
18 |
tctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacatttatctgtga |
117 |
Q |
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|||||||||| ||||||||| ||||| |||||||| |||||||||| |||||||| || ||||||||||||||| || ||||| ||| |||||||||||| |
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| T |
4906768 |
tctaacatgatcatcttatcgaagatggtattcttgtaatttgtgcatgctacttgaagtagaaccataccaaaggagtaaacgtcagatttatctgtga |
4906867 |
T |
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| Q |
118 |
atgtattggttcggacacactctggcgccatgta |
151 |
Q |
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| T |
4906868 |
aagtgttggttaggacatactttgctgccatgta |
4906901 |
T |
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