View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_41 (Length: 238)
Name: NF9448_low_41
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 15521011 - 15520798
Alignment:
| Q |
12 |
ttagtcattgatcgaacgttcaagatttctaaatttcaattaaccaaatttaatatttgagccaccagatttatatcaaaaaacttataaataaactgac |
111 |
Q |
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| T |
15521011 |
ttagccattgatcgaacggtcaagattcctagttttcaattaaccaaatttaatatttgagccaccagatttatatcaaaaaacttataaataaactgac |
15520912 |
T |
|
| Q |
112 |
tatagtgaccgtaggaaattccaactgtagggaa-tatgtctggtttgtttattgtatttaatggaatttttgcattttcaatgatcctaacaaactttt |
210 |
Q |
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| T |
15520911 |
tatagtgactgtaggaaattccaattacagggaattacatctggtttgtttattgtatttaatggaatttttgcattttcaatgatcctaacaatttttt |
15520812 |
T |
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| Q |
211 |
ttaccatatgatgt |
224 |
Q |
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|||||||||||||| |
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| T |
15520811 |
ttaccatatgatgt |
15520798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 15495140 - 15495340
Alignment:
| Q |
26 |
aacgttcaagatttctaaatttcaattaaccaaatttaa-tatttgagccaccagatttatatcaaaaaacttataaataaactgactatagtgaccgta |
124 |
Q |
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||||||||||||| ||| ||||||| || ||||| || ||||||||| ||||| |||||| | ||| ||||| |||||||||||||||||| || |
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| T |
15495140 |
aacgttcaagattcctatctttcaatagactaaattaaaatatttgagctgccagacctatatcgattaacatataattaaactgactatagtgacaata |
15495239 |
T |
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| Q |
125 |
ggaaattccaactgtagggaat-atgtctggtttgtttattgtatttaatggaatttttgcattttcaatgatcctaacaaacttttttaccatatgatg |
223 |
Q |
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|||| |||| ||| |||||||| |||| | || |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| ||||||||| |
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| T |
15495240 |
ggaagttccgactatagggaattatgtttagtgtgtttattgtatttaatgaaatttttgcattttcaatgctcctaacaaagatttttgtcatatgatg |
15495339 |
T |
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| Q |
224 |
t |
224 |
Q |
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| T |
15495340 |
t |
15495340 |
T |
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