View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_43 (Length: 231)
Name: NF9448_low_43
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 41481150 - 41480948
Alignment:
| Q |
15 |
gtgttatgtagttgaacataatccaatcagttacaagagttccttgattggttatcgttgaaataaagtaatagtctcctgaccgtgaacagaaagcagt |
114 |
Q |
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| T |
41481150 |
gtgttatgtagttgaacataatccaatcagttacaagagttccttgattggttatcgttgaaataaagtaatagtctcctgaccgtgaacagaaagcagt |
41481051 |
T |
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| Q |
115 |
cttcaactgtccaaaaggatatcacaatgagagaagctaattctgatgagcaatctattcaattctgataagctctgtgctatgtgttagtaatgcagtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
41481050 |
cttcaactgtccaaaaggatatcacaatgagagaagctaattctgatgagcaatctattcaattctgataagctctgtgctatgtgattgtaatgcagtt |
41480951 |
T |
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| Q |
215 |
att |
217 |
Q |
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||| |
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| T |
41480950 |
att |
41480948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 45386499 - 45386643
Alignment:
| Q |
69 |
tcgttgaaataaagtaatagtctcctgaccgtgaacagaaagcagtcttcaactgtccaaaaggatatcacaatgagagaagctaattctgatgagcaat |
168 |
Q |
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| T |
45386499 |
tcgttgatataaagtgctagtctcctgaccatgagcagaaagcagtctgtaactgtctaaaaggatatcagaatcagataaactaattctgataagcaat |
45386598 |
T |
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| Q |
169 |
ctattcaattctgataagctctgtgctatgtgttagtaatgcagtta |
215 |
Q |
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| T |
45386599 |
atataca--tctgataagttctgtgctataagatagtaatgcagtta |
45386643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 5736630 - 5736694
Alignment:
| Q |
20 |
atgtagttgaacataatccaatcagttacaagagttccttgattggttatcgttgaaataaagta |
84 |
Q |
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|||||||||||||||||| ||||| || ||||||||||||||| |||| || |||||||||| |
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| T |
5736630 |
atgtagttgaacataatctaatcatatatgggagttccttgattggatatcatttaaataaagta |
5736694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 5773742 - 5773806
Alignment:
| Q |
20 |
atgtagttgaacataatccaatcagttacaagagttccttgattggttatcgttgaaataaagta |
84 |
Q |
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|||||||||||||||||| ||||| || ||||||||||||||| |||| || |||||||||| |
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| T |
5773742 |
atgtagttgaacataatctaatcatatatgggagttccttgattggatatcatttaaataaagta |
5773806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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