View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_45 (Length: 212)
Name: NF9448_low_45
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 20476125 - 20476234
Alignment:
| Q |
18 |
gatacattcattgttaattacttcttgttatgatgaataattactttgagctagcattaagtaatcattgaataggtaattgttgttcatgtaatgtgtt |
117 |
Q |
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| T |
20476125 |
gataccttcattgttaattacttcttgttatgatgaataattactttgagctagcattaagtaatcattgaataggtaattgttgttcatgtaatgtgtt |
20476224 |
T |
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| Q |
118 |
ccttccttaa |
127 |
Q |
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|||||||||| |
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| T |
20476225 |
ccttccttaa |
20476234 |
T |
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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 20476428 - 20476481
Alignment:
| Q |
128 |
ctaaataaatggggagggaaaagcaagttataagagtgattttcggtaaaacaa |
181 |
Q |
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| T |
20476428 |
ctaaataaatggggagggaaaagcgatttataggagtggttttcggtaaaacaa |
20476481 |
T |
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