View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_5 (Length: 477)
Name: NF9448_low_5
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Complemental strand, 53097092 - 53096634
Alignment:
| Q |
19 |
gtttttacaagctagcgctagtatgactggtatcttatttatcaacttgcgtttcaggtcggagtaattggttgtaagcaagaacaacatataatcaagt |
118 |
Q |
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| T |
53097092 |
gtttttacaagctagcgctagtatgactggtgtcttatttatcaacttgcgtttcaggtcggaggcattggttgtaagcaagaacaacatataatcaagt |
53096993 |
T |
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| Q |
119 |
accaaagagaaaacggtatgtgaggacagaattttgctcgttggttgttacaagcagtgatttttcttacttggttgatgactaaagtattttatcattt |
218 |
Q |
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| T |
53096992 |
accaaagagaaaacggtatgtgaggacagaattttgctcgttggttgttacaagcagtgatttttcttacttgggtgatgactaaagcattttatcattt |
53096893 |
T |
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| Q |
219 |
ggttaatacctagacatctttggttgttttaacagaaggtctaacattattgccaggctcgacgcatgcaactaatgcttcttgtttgcagtaaatttct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53096892 |
ggttaatacctagacatctttggttgttttaacagaaggtctaacattattgccaggctcgacgtatgcaactaatgcttcttgtttgcagtaaatttct |
53096793 |
T |
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| Q |
319 |
tttactcaacttcattttgaccttgttatgtagcctaatttcctccacccccttcatttctgctcatccaaattcgatggannnnnnnncttaaggtctt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53096792 |
tttactcaacttcattttgaccttgttatgtagcctaatttcctccacccccttcatttctgctcatccaaattcgatggattttttttcttaaggtctt |
53096693 |
T |
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| Q |
419 |
ctgctgccgctaaagctccacattggctgaatgctgctatttgcaactccaaactcgat |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53096692 |
ctgctgccgctaaagctccacattggctgaatgctgctatttgcaactccaaacacgat |
53096634 |
T |
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