View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9448_low_6 (Length: 438)
Name: NF9448_low_6
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9448_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 43102225 - 43101796
Alignment:
| Q |
1 |
accaaggggtggcttctaccatcatttgattcctctgccccagatgtctagctaaactacccagggcatgttgtcctcccattgaagatgggataatctg |
100 |
Q |
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| T |
43102225 |
accaaggggtggcttctaccatcatttgattcctctgccccagatgtctagctaaactacccagggcatgtagtcctcccattgaagatgggataatctg |
43102126 |
T |
|
| Q |
101 |
ggattgtttgacatggtcctttccatttgctcttttacttgacatttttcttctagaatcatttcactgaggttcctgttacttcggtcattgtaaaaag |
200 |
Q |
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| T |
43102125 |
ggattgtttgacatggtcctttccatttgctcttttacttgacatttttcttctagaatcatttcactgaggtttctgttacttcggtcattgtaaaaag |
43102026 |
T |
|
| Q |
201 |
ttggtcttatttcatttacagcttttcaggataatgttgcatcaagaggtagttgtcttttaacatttactctctctggatgaagggtctgttggttgtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43102025 |
ttggtcttatttcatttacagcttttcaggataatgttgcatcaagaggtagttgtcttttaacatttact--ctctggatgaagggtctgttggttgtg |
43101928 |
T |
|
| Q |
301 |
cacttttacaccattagatcaagtttagtttgaaagatatatcaattggctactatttttagattcctggtttcggtctccaattttcaaaat------- |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43101927 |
cacttttacaccattagatcaagtttagtttgaaagatatatcaaatggctactatttttagattcctggtttcggtctccaattttcaaaatatttaaa |
43101828 |
T |
|
| Q |
394 |
---tttcccacctatgcatgcttaatgtgatg |
422 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43101827 |
aaatttcccacctatgcatgcttaatgtgatg |
43101796 |
T |
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