View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9448_low_8 (Length: 427)

Name: NF9448_low_8
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9448_low_8
NF9448_low_8
[»] chr7 (15 HSPs)
chr7 (15-369)||(12640113-12640481)
chr7 (191-401)||(44629360-44629569)
chr7 (191-340)||(19362613-19362762)
chr7 (198-337)||(31642806-31642943)
chr7 (191-293)||(40954853-40954955)
chr7 (285-382)||(44598584-44598681)
chr7 (191-255)||(12467576-12467640)
chr7 (198-265)||(9698092-9698159)
chr7 (191-281)||(12820374-12820464)
chr7 (232-350)||(26074971-26075089)
chr7 (232-350)||(26098758-26098876)
chr7 (299-388)||(9698163-9698252)
chr7 (191-278)||(21267806-21267893)
chr7 (198-244)||(27348216-27348262)
chr7 (355-396)||(19113405-19113446)
[»] chr4 (14 HSPs)
chr4 (192-396)||(46851865-46852067)
chr4 (198-276)||(31523144-31523219)
chr4 (191-280)||(26494685-26494774)
chr4 (191-279)||(49497648-49497736)
chr4 (191-255)||(50070181-50070245)
chr4 (198-265)||(13564469-13564536)
chr4 (191-255)||(33226279-33226343)
chr4 (299-388)||(13564540-13564629)
chr4 (191-334)||(30828491-30828633)
chr4 (198-280)||(37986937-37987019)
chr4 (198-255)||(19097234-19097291)
chr4 (198-255)||(52489822-52489879)
chr4 (224-293)||(52797664-52797733)
chr4 (191-251)||(29924567-29924627)
[»] chr8 (4 HSPs)
chr8 (191-341)||(24887990-24888140)
chr8 (191-321)||(27084265-27084395)
chr8 (191-341)||(25430990-25431140)
chr8 (198-280)||(33011825-33011907)
[»] chr1 (12 HSPs)
chr1 (191-339)||(28702233-28702380)
chr1 (201-341)||(52453689-52453829)
chr1 (191-394)||(171029-171233)
chr1 (198-396)||(23826067-23826262)
chr1 (293-396)||(10370930-10371033)
chr1 (198-307)||(34870589-34870698)
chr1 (192-253)||(29663840-29663901)
chr1 (229-297)||(4808504-4808572)
chr1 (191-255)||(14876786-14876850)
chr1 (186-307)||(29773667-29773788)
chr1 (195-298)||(10371907-10372004)
chr1 (198-255)||(50432569-50432626)
[»] chr3 (12 HSPs)
chr3 (191-334)||(29438468-29438611)
chr3 (191-350)||(43615880-43616038)
chr3 (191-322)||(4221291-4221422)
chr3 (191-258)||(145484-145551)
chr3 (191-278)||(1610006-1610093)
chr3 (191-278)||(47648998-47649085)
chr3 (261-342)||(788858-788940)
chr3 (269-331)||(38378533-38378596)
chr3 (191-255)||(24481807-24481871)
chr3 (191-278)||(21662157-21662244)
chr3 (217-249)||(788440-788472)
chr3 (198-278)||(1829593-1829673)
[»] chr6 (3 HSPs)
chr6 (192-401)||(32786611-32786816)
chr6 (198-350)||(14533687-14533835)
chr6 (191-280)||(20612962-20613051)
[»] chr2 (10 HSPs)
chr2 (218-388)||(14735461-14735639)
chr2 (291-396)||(17623267-17623372)
chr2 (198-279)||(38972224-38972305)
chr2 (191-255)||(9615684-9615749)
chr2 (191-348)||(38575569-38575725)
chr2 (198-278)||(4056215-4056295)
chr2 (191-255)||(4580556-4580620)
chr2 (206-313)||(1315114-1315221)
chr2 (191-255)||(6590406-6590470)
chr2 (191-271)||(30076220-30076300)
[»] chr5 (4 HSPs)
chr5 (191-253)||(16717200-16717262)
chr5 (191-253)||(19645453-19645515)
chr5 (201-342)||(32633002-32633143)
chr5 (188-255)||(15107796-15107862)
[»] scaffold0325 (1 HSPs)
scaffold0325 (191-255)||(19763-19827)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 12640113 - 12640481
Alignment:
Q  15 gtatttaacatcccctttatagaaaagaaaaactaagttttaaactactgaccacttgcttaagaaatcaaatgccttaccacttgaacaaattattctt 114  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12640113 gtatttaacatccc-tttatagaaaagaaaaactaagtttcaaactactgaccacttgcttaagaaatcaaatgccttaccacttgaacaaattattctt 12640211  T
Q  115 ggtattaacttttttatagtaaa---------------aaagaagggaaaaggggactttttatttattaattaaagtggcatttataacggtggcgaat 199  Q
    |||||| |||||||||||  |||               ||| || ||||| |||||| ||||||||||||||||||||| |||| | |||  ||||| ||    
T  12640212 ggtattgacttttttataaaaaataaaaaataaaaataaaaaaaaggaaagggggacattttatttattaattaaagtgacattaacaaccatggcggat 12640311  T
Q  200 cttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaatg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  12640312 cttgagttaatttgtcgggggtgccaaacttttatggaatatatattaaatggttttacgcattaacaataattaataactgatcaagtggtataaaatg 12640411  T
Q  300 ttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaa 369  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12640412 ttttaaaggagcaagtggatgttagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaa 12640481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 191 - 401
Target Start/End: Complemental strand, 44629569 - 44629360
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| |||||||||| |||||| ||||||||||||||| ||||||||||||| |||| ||||| ||| |   |||||||||| |||||||   |||||    
T  44629569 gtggcggatcttgagttgatttgtagggggtgccaaacttctatggaatatatattaaacggtttcaagaagatacaataattagtaactgacctagtgg 44629470  T
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaagtagaagattaaatatgtata 390  Q
    |||||| ||||| ||| || |||| ||||||| |||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||||||| |    
T  44629469 tataaattgtttgaaaagaacaagaggatgtgggtttgaatcccctcaaaaacgtttttttta-atacaatatgtaaaagtagaagattaaatatgtaaa 44629371  T
Q  391 aagaagttgtg 401  Q
    |||||| ||||    
T  44629370 aagaagatgtg 44629360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 191 - 340
Target Start/End: Complemental strand, 19362762 - 19362613
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||| ||| ||||  ||||||||||  |||   ||||||    
T  19362762 gtggcggatcttgagttattttgttgggggtgccaaacttttatggaatatatattaactggtttcaagtattattaataattaatggctggccaagtgg 19362663  T
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaa 340  Q
    |||||||||||||||||||||||| ||| ||| |||||| ||||||||||    
T  19362662 tataaaatgttttaaaggagcaagaggaagtgggtttgattcccctcaaa 19362613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 337
Target Start/End: Complemental strand, 31642943 - 31642806
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaa 297  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| ||| |||||| ||| ||||  ||||||||||| ||||  |||||||||||||    
T  31642943 atcttgagttaatttgttggggatgccaaacttttatggaatatatattaactggtttcaagtattattaataattaatagctgaccaagtggtataaaa 31642844  T
Q  298 tgttttaaaggagcaagtggatgtgagtttgaatcccctc 337  Q
    ||||||||| ||||||  ||| ||| ||||||||||||||    
T  31642843 tgttttaaaagagcaa--ggaagtgggtttgaatcccctc 31642806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 40954853 - 40954955
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| |||||||||||| |||| ||||||||||||| | |||| |||||||| |||||||||| ||| | || |||| ||||||||| | || |||||    
T  40954853 gtggcggatcttgagttaaattgttgggggtgccaaacatatatgaaatatatattaaatggtttcaagaaatatcaattattaataaccgttttagtgg 40954952  T
Q  291 tat 293  Q
    |||    
T  40954953 tat 40954955  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 44598681 - 44598584
Alignment:
Q  285 aagtggtataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaagtagaagattaaa 382  Q
    |||||||||||||||| ||||||||||||| ||| ||| ||| |||||||||| |||   ||||||  | ||||||||||||| | ||||||||||||    
T  44598681 aagtggtataaaatgtgttaaaggagcaagaggaagtgggttcgaatcccctcgaaacgtttttttttaaatacaatatgcaataatagaagattaaa 44598584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 12467576 - 12467640
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||| |||||||||||| |||| ||||||||||||| | ||||||||||||| ||||||||||    
T  12467576 gtggcggatcttgagttaaattgttgggggtgccaaacatatatggaatatatattaaatggttt 12467640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 9698092 - 9698159
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaa 265  Q
    ||||||||||||||||| || ||||| ||| |||||||||||||||| |||||||||| ||| |||||    
T  9698092 atcttgagttaatttgttggaggtgcaaaaattttatggaatatatattaaatggtttcaagtattaa 9698159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 281
Target Start/End: Original strand, 12820374 - 12820464
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactg 281  Q
    |||||| |||||||||||| |||| ||||||||||||| | |||| |||||||| |||||||||| ||| | || |||| ||| |||||||    
T  12820374 gtggcggatcttgagttaaattgttgggggtgccaaacatatatgaaatatatattaaatggtttcaagaaatatcaattatttataactg 12820464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 350
Target Start/End: Original strand, 26074971 - 26075089
Alignment:
Q  232 tatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaatgttttaaaggagcaagtggatgtgagtttgaat 331  Q
    ||||||||||||| |||||||||| ||| | || |||||||| ||||| |    |||||||||||   ||||||||||||||| || |||| ||||||||    
T  26074971 tatggaatatatattaaatggtttcaagaagtatcaataatttataaccggcctagtggtataaatccttttaaaggagcaagagggtgtgggtttgaat 26075070  T
Q  332 cccctcaaaaacgtttttt 350  Q
    | | ||||||| |||||||    
T  26075071 cacttcaaaaatgtttttt 26075089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 350
Target Start/End: Original strand, 26098758 - 26098876
Alignment:
Q  232 tatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaatgttttaaaggagcaagtggatgtgagtttgaat 331  Q
    ||||||||||||| |||||||||| ||| | || |||||||| ||||| |    |||||||||||   ||||||||||||||| || |||| ||||||||    
T  26098758 tatggaatatatattaaatggtttcaagaagtatcaataatttataaccggcctagtggtataaatccttttaaaggagcaagagggtgtgggtttgaat 26098857  T
Q  332 cccctcaaaaacgtttttt 350  Q
    | | ||||||| |||||||    
T  26098858 cacttcaaaaatgtttttt 26098876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 388
Target Start/End: Original strand, 9698163 - 9698252
Alignment:
Q  299 gttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaagtagaagattaaatatgta 388  Q
    ||||| |||||||||| ||| ||| ||| |||||| ||||| || |||||||  | ||||||||||||| | |||||||||||| |||||    
T  9698163 gttttgaaggagcaagaggaagtgggttcgaatccactcaagaatgttttttttaaatacaatatgcaataatagaagattaaacatgta 9698252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 21267893 - 21267806
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataa 278  Q
    |||||| ||||||| |||| || | |||||||||||| || ||| ||||||||| |||||||||| |||   || |||||||||||||    
T  21267893 gtggcggatcttgaattaaattcttgggggtgccaaatttctatagaatatatattaaatggtttcaagttatatcaataattaataa 21267806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 27348262 - 27348216
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatata 244  Q
    ||||||||| ||||||| |||||||||||| ||||||| ||||||||    
T  27348262 atcttgagtaaatttgttgggggtgccaaaattttatgaaatatata 27348216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 19113405 - 19113446
Alignment:
Q  355 atacaatatgcaaaagtagaagattaaatatgtataaagaag 396  Q
    ||||||||||||||| ||||||||||||| |||| |||||||    
T  19113405 atacaatatgcaaaattagaagattaaatgtgtagaaagaag 19113446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 192 - 396
Target Start/End: Original strand, 46851865 - 46852067
Alignment:
Q  192 tggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggt 291  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |||  |||||||||| |||| |||||||||||||| | | |||||||    
T  46851865 tggcggatcttgagttaatttgttgggggtgccaaacttttatgaaatatattata--tggttttaagtattatcaataattaataaccggtcaagtggt 46851962  T
Q  292 ataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaagtagaagattaaatatgtataa 391  Q
    ||||||| ||||||| ||||||||||||||  |||| ||||||||||||||| |||| |  | |||||||||||||||||||||| ||||| ||||| ||    
T  46851963 ataaaatattttaaatgagcaagtggatgttggtttaaatcccctcaaaaactttttatttaaatacaatatgcaaaagtagaaggttaaaaatgtaaaa 46852062  T
Q  392 agaag 396  Q
    |||||    
T  46852063 agaag 46852067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 31523219 - 31523144
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaat 276  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||   ||||||||||||||  |||| |||||||||||    
T  31523219 atcttgagttaatttgttgggagtgccaaacttttatggaatat---ataaatggttttaactattatcaataattaat 31523144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 26494774 - 26494685
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataact 280  Q
    |||||| ||||||||| ||||| | |||||||||||||||| |||||||||||| ||||  |||||||| | ||||||||| | ||||||    
T  26494774 gtggcggatcttgagtaaattttttgggggtgccaaactttcatggaatatatattaaacagttttaagaactaacaataaatgataact 26494685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 49497736 - 49497648
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataac 279  Q
    |||||| |||||||||||| |||| ||||||| ||||| | |||| |||||||| |||||||||||||| | || |||| |||||||||    
T  49497736 gtggcggatcttgagttaaattgttgggggtgtcaaacatatatgaaatatatattaaatggttttaagaaatatcaattattaataac 49497648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 50070245 - 50070181
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||| ||||||| ||||||||| ||||||||||||||| |||| |||||||| ||||||||||    
T  50070245 gtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggttt 50070181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 13564469 - 13564536
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaa 265  Q
    ||||||||||||||||| || ||||| ||| |||||||||||||||| |||||||||| ||| |||||    
T  13564469 atcttgagttaatttgttggaggtgcaaaaattttatggaatatatattaaatggtttcaagtattaa 13564536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 33226343 - 33226279
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||| ||||||| |||| |||| ||||||||||||||| |||| |||||||| ||||||||||    
T  33226343 gtggcggatcttgacttaaattgttgggggtgccaaacttctatgtaatatatattaaatggttt 33226279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 388
Target Start/End: Original strand, 13564540 - 13564629
Alignment:
Q  299 gttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaagtagaagattaaatatgta 388  Q
    ||||| |||||||||| ||| ||| ||| |||||| ||||| || |||||||  | ||||||||||||| | |||||||||||| |||||    
T  13564540 gttttgaaggagcaagaggaagtgggttcgaatccactcaagaatgttttttttaaatacaatatgcaataatagaagattaaacatgta 13564629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 334
Target Start/End: Complemental strand, 30828633 - 30828491
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| ||||||| ||||||||| |||| || |||| || |||| |||||||| |||||| ||| ||| | ||  | |||||||||||||  | |||||    
T  30828633 gtggcggatcttgacttaatttgttgggg-tgtcaaatttctatgtaatatatattaaatgatttcaagaaatagtagtaattaataactgggttagtgg 30828535  T
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatccc 334  Q
    ||| |  ||||| |||| |||||| | ||||| |||||||||||    
T  30828534 tatgacttgtttgaaagtagcaagagaatgtgggtttgaatccc 30828491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 37986937 - 37987019
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataact 280  Q
    ||||||||| ||||| | |||||||||||||||  |||||||||||| ||||  |||||||  | ||||||||| | ||||||    
T  37986937 atcttgagtaaattttttgggggtgccaaacttccatggaatatatattaaacagttttaaaaactaacaataaatgataact 37987019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 19097291 - 19097234
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||||||||| |||| ||| ||| ||||| | ||||||||||||| ||||||||||    
T  19097291 atcttgagttaaattgttgggagtgtcaaacatatatggaatatatattaaatggttt 19097234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 52489822 - 52489879
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||||||||||||||  |||||| ||||||| |||||||| |||| |||| |||||    
T  52489822 atcttgagttaatttgttaggggtgtcaaacttctatggaatgtatattaaacggttt 52489879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 52797664 - 52797733
Alignment:
Q  224 caaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtat 293  Q
    |||| |||||||||||||||| ||||| ||||  || ||||| |||||||||||| ||||  ||||||||    
T  52797664 caaatttttatggaatatatattaaatagtttcgagaattaataataattaataattgatctagtggtat 52797733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 29924627 - 29924567
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatg 251  Q
    |||||| |||||||||||| || | ||||||| ||||||| |||| |||||||| ||||||    
T  29924627 gtggcggatcttgagttaaatttttgggggtgtcaaacttctatgaaatatatattaaatg 29924567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 191 - 341
Target Start/End: Original strand, 24887990 - 24888140
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||| ||| |||| |||||||||||| |||  |||||||    
T  24887990 gtggcggatcttgagttaatttgttgggggtgccaaaattttatggaatatatattaactggtttcaagtattatcaataattaatagctggataagtgg 24888089  T
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaa 341  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  24888090 tataaaatgttttaaaggagcaagaggaagtgggtttgaatcccctcaaaa 24888140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 191 - 321
Target Start/End: Original strand, 27084265 - 27084395
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||  |   ||| |     
T  27084265 gtggcgaatcttgagttaatttgttgggggtgccaaacttttatggaatatatatcaaatggttttaagtattaacaataattaataataggccaagcga 27084364  T
Q  291 tataaaatgttttaaaggagcaagtggatgt 321  Q
    | | |||||||| ||||||||||||||||||    
T  27084365 tgtcaaatgtttgaaaggagcaagtggatgt 27084395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 191 - 341
Target Start/End: Complemental strand, 25431140 - 25430990
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| || ||||||||||||||||||||||||||  |||||||||||||||| ||| |||||| |||  ||| |||||||||||| |||   || |||    
T  25431140 gtggcggattttgagttaatttgtcgggggtgccaatattttatggaatatatattaactggtttcaagtgttatcaataattaatagctggacaaatgg 25431041  T
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaa 341  Q
    |||||||| ||||||||||||||| ||| ||| |||  |||||||| ||||    
T  25431040 tataaaatattttaaaggagcaagaggaagtgggttcaaatccccttaaaa 25430990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 33011825 - 33011907
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataact 280  Q
    ||||||| | ||||||| ||||||  ||||||| ||||||||||||| ||||  |||||||| | |||||| || ||||||||    
T  33011825 atcttgaataaatttgttgggggtatcaaacttctatggaatatatattaaacagttttaagaaataacaacaaataataact 33011907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 191 - 339
Target Start/End: Original strand, 28702233 - 28702380
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||| |||| ||||||||||||  ||   ||||||    
T  28702233 gtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatatttaatggtttcaagtattatcaataattaatagttggccaagtgg 28702332  T
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaa 339  Q
    | ||||||||||| |||||||||| ||| ||| ||||||||||||||||    
T  28702333 t-taaaatgttttgaaggagcaagaggaagtgggtttgaatcccctcaa 28702380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 52453689 - 52453829
Alignment:
Q  201 ttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaatgt 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||| |||| |||||||||||  |||   ||||||||||||||||    
T  52453689 ttgagttaatttgttgggggtgccaaacttttatggaatatatattaactggtttaaagtattatcaataattaattgctggccaagtggtataaaatgt 52453788  T
Q  301 tttaaaggagcaagtggatgtgagtttgaatcccctcaaaa 341  Q
    |||||| || |||| ||| ||| ||||||||||||||||||    
T  52453789 tttaaaagaacaagaggaagtgggtttgaatcccctcaaaa 52453829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 191 - 394
Target Start/End: Complemental strand, 171233 - 171029
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| ||||||||||||||||| |||  |||||||| ||||||||||||||| ||||| |||| ||  ||||||||||||||||   ||   ||||||    
T  171233 gtggcggatcttgagttaatttgttggga-tgccaaacctttatggaatatatattaaattgtttcaaatattaacaataattaatggttgcccaagtgg 171135  T
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaac--gttttttacatatacaatatgcaaaagtagaagattaaatatgta 388  Q
    |||||||||||||||||||||||    |  ||||||||||||||||||| |||   ||||||  | ||||||||||||| | |||||||||||| |||||    
T  171134 tataaaatgttttaaaggagcaacaacaattgagtttgaatcccctcaataactttttttttttaaatacaatatgcaataatagaagattaaacatgta 171035  T
Q  389 taaaga 394  Q
     |||||    
T  171034 aaaaga 171029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 198 - 396
Target Start/End: Complemental strand, 23826262 - 23826067
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaa 297  Q
    |||||||||||| || | | ||||||||||||| ||||||||||||| |||| | ||| ||| | ||||||||||||||||||| |  |||||||||||     
T  23826262 atcttgagttaacttattgtgggtgccaaacttctatggaatatatattaaacgatttcaagaagtaacaataattaataactggtctagtggtataaat 23826163  T
Q  298 tgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaagtagaagattaaatatgtataaagaag 396  Q
    | ||| ||||||||||| |  |||  ||||||||| | |||||||| ||||||| | |||||| ||| |||| ||||||| |||||||||| |||||||    
T  23826162 tatttgaaaggagcaagagcgtgtaggtttgaatctcatcaaaaacattttttata-atacaa-atggaaaaatagaaga-taaatatgtaaaaagaag 23826067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 293 - 396
Target Start/End: Complemental strand, 10371033 - 10370930
Alignment:
Q  293 taaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaagtagaagattaaatatgtataaa 392  Q
    |||||||||| ||||||||||||||||||| |||  |||||||||||||| |||||||  | ||| |||||| ||||||| ||||||||||||||| |||    
T  10371033 taaaatgtttgaaaggagcaagtggatgtgggttcaaatcccctcaaaaatgttttttttaaatataatatggaaaagtaaaagattaaatatgtaaaaa 10370934  T
Q  393 gaag 396  Q
    ||||    
T  10370933 gaag 10370930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 307
Target Start/End: Complemental strand, 34870698 - 34870589
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaa 297  Q
    ||||||||| || |||| ||||||| ||||||| ||||||||||||| | |||| ||| ||| |||||||||||||||||| ||||  |||||||| ||     
T  34870698 atcttgagtaaaattgttgggggtgtcaaacttctatggaatatatattgaatgatttcaagaattaacaataattaataattgatctagtggtattaat 34870599  T
Q  298 tgttttaaag 307  Q
    ||||| ||||    
T  34870598 tgtttgaaag 34870589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 29663840 - 29663901
Alignment:
Q  192 tggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggt 253  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||||||| || |||||    
T  29663840 tggcggatcttgagttaatttgctgggggtgccaaacttttatggaatatatattatatggt 29663901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 4808572 - 4808504
Alignment:
Q  229 ttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaa 297  Q
    ||||||| |||||||| |||||||||| ||| |||| |||||||||||| ||||| |||||||||||||    
T  4808572 ttttatgaaatatatattaaatggtttcaagtattatcaataattaatagctgatcaagtggtataaaa 4808504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 14876786 - 14876850
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||| ||||||| ||||||||| ||||||||||||||| |||| |||||||| ||||||||||    
T  14876786 gtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggttt 14876850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 307
Target Start/End: Complemental strand, 29773788 - 29773667
Alignment:
Q  186 taacggtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgatta 285  Q
    |||| ||| ||||||||||||||| || | |||||||||||| || ||||||||||||| |||||| ||| |||   || ||||||||||||| |||       
T  29773788 taacagtgacgaatcttgagttaaattcttgggggtgccaaatttctatggaatatatattaaatgatttcaagttatatcaataattaataattgacct 29773689  T
Q  286 agtggtataaaatgttttaaag 307  Q
    |||||||| || ||||| ||||    
T  29773688 agtggtattaattgtttgaaag 29773667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 10372004 - 10371907
Alignment:
Q  195 cgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtata 294  Q
    |||||||||||||||||||| |||| |   ||| ||||||| |||||||| |||||||||||||| |     ||||||||||||| ||| ||||||||||    
T  10372004 cgaatcttgagttaatttgttgggg-tattaaatttttatgaaatatatattaaatggttttaagta-----aataattaataacagatcaagtggtata 10371911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 50432626 - 50432569
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||||||||| |||| ||||||||||||  | ||||||||||||| ||||||||||    
T  50432626 atcttgagttaaattgttgggggtgccaaatatatatggaatatatattaaatggttt 50432569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 191 - 334
Target Start/End: Complemental strand, 29438611 - 29438468
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| ||| |||||| ||| |||| ||||||||||||  ||   |||| |    
T  29438611 gtggcgaatcttgagttaatttgttgggagtgtcaaacttttatggaatatatattaactggtttcaagtattatcaataattaatagttggccaagttg 29438512  T
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatccc 334  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||    
T  29438511 tataaaatgttttaaaggagcaagaggaagtgggtttgaatccc 29438468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 350
Target Start/End: Complemental strand, 43616038 - 43615880
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| ||| | |||  ||| |||| |||||||||||| |||  |||||||    
T  43616038 gtggcggatcttgagttaatttgttgggggtgtcaaacttttatggaatatatattaactagttc-aagtattatcaataattaatagctggctaagtgg 43615940  T
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgtttttt 350  Q
    |||||||||||||||||||||||| ||| |||  ||||||||| |||  ||| |||||||    
T  43615939 tataaaatgttttaaaggagcaagaggaagtggttttgaatcctctcttaaatgtttttt 43615880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 322
Target Start/End: Complemental strand, 4221422 - 4221291
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| ||||||| ||||||||| ||||||||||||||| |||| |||||||| ||||  |||| ||| | ||| ||||||||||||| ||   |||||    
T  4221422 gtggcggatcttgaattaatttgttgggggtgccaaacttctatgaaatatatattaaacagtttcaagaagtaataataattaataaccgacctagtgg 4221323  T
Q  291 tataaaatgttttaaaggagcaagtggatgtg 322  Q
    |||||| | ||| ||| ||||||| |||||||    
T  4221322 tataaattttttgaaaagagcaagaggatgtg 4221291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 145551 - 145484
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaa 258  Q
    |||||| ||||||| ||||||||| ||||||||||||||| |||| |||||||| |||||||||||||    
T  145551 gtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggttttaa 145484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 1610093 - 1610006
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataa 278  Q
    |||||| ||||||| |||| |||  ||||||||||||||||||||||||||||| |||||||||| ||| | ||  ||||||||||||    
T  1610093 gtggcggatcttgacttaaattgctgggggtgccaaacttttatggaatatatattaaatggtttcaagaagtagtaataattaataa 1610006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 47648998 - 47649085
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataa 278  Q
    |||||| |||||||||||| || | |||||||||||| || ||||||||||||| |||||||||| |||   || |||||||||||||    
T  47648998 gtggcggatcttgagttaaattcttgggggtgccaaatttctatggaatatatattaaatggtttcaagttatatcaataattaataa 47649085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 788858 - 788940
Alignment:
Q  261 attaacaataattaataactgattaagtggtataaaatgt-tttaaaggagcaagtggatgtgagtttgaatcccctcaaaaa 342  Q
    |||| |||||||||||||||| |||||||||||| |||||  ||||||||||||| ||||||| ||| |||||| || |||||    
T  788858 attatcaataattaataactggttaagtggtatagaatgtccttaaaggagcaagaggatgtgggttcgaatcctcttaaaaa 788940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 38378533 - 38378596
Alignment:
Q  269 taattaataactgattaagtggtataaaatg-ttttaaaggagcaagtggatgtgagtttgaat 331  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||| ||| ||||    
T  38378533 taattaataattgatcaagtggtataaaatgtttttaaaggagcaagaggatgtgggttcgaat 38378596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 24481807 - 24481871
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||| |||||||||||| || | | ||||| ||||||| ||||||||||||| ||||||||||    
T  24481807 gtggcggatcttgagttaaatttttgagggtgtcaaacttctatggaatatatattaaatggttt 24481871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 21662157 - 21662244
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataa 278  Q
    |||||| |||||||||||| ||   ||| |||||||| || ||||||||||||| |||||||||| |||   || |||||||||||||    
T  21662157 gtggcggatcttgagttaaattcctgggagtgccaaatttctatggaatatatattaaatggtttcaagatatatcaataattaataa 21662244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 788440 - 788472
Alignment:
Q  217 ggggtgccaaacttttatggaatatataataaa 249  Q
    |||||||||||||||||||||||||||| ||||    
T  788440 ggggtgccaaacttttatggaatatatattaaa 788472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 1829673 - 1829593
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataa 278  Q
    ||||||||| ||||| |  |||||| ||||||| |||||||||||||  |||  |||||||| | ||||||||| ||||||    
T  1829673 atcttgagtaaatttttttggggtgtcaaacttctatggaatatatatcaaacagttttaagaactaacaataaataataa 1829593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 401
Target Start/End: Original strand, 32786611 - 32786816
Alignment:
Q  192 tggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggt 291  Q
    ||||| |||||||||||||||||  ||| || ||||||| ||||||||||||| |||| ||||| ||| | ||| |||||||||||| ||  | ||| ||    
T  32786611 tggcggatcttgagttaatttgttaggg-tgtcaaacttctatggaatatatattaaacggtttcaagaagtaaaaataattaataattggcttagtcgt 32786709  T
Q  292 ataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaagtagaagattaaatatgtataa 391  Q
    ||||| ||||| |||| |||||| ||||||| |||||||||| ||  ||||||||||||    |||||||||  |||||||||||| |||||||||| ||    
T  32786710 ataaattgtttcaaagaagcaagaggatgtgggtttgaatcctctttaaaacgtttttt--taatacaatatctaaaagtagaaga-taaatatgtaaaa 32786806  T
Q  392 agaagttgtg 401  Q
    ||| ||||||    
T  32786807 agatgttgtg 32786816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 350
Target Start/End: Complemental strand, 14533835 - 14533687
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaa 297  Q
    ||||||||||||||||| | || ||||| |||||   |||||||||| ||| |||||| ||| |||| |||||||||||| |||   |||||||||||||    
T  14533835 atcttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaagtggtataaaa 14533739  T
Q  298 tgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgtttttt 350  Q
    |||||||||||||||||  || ||  ||||||||||||||  |||||||||||    
T  14533738 tgttttaaaggagcaagatgaagtcggtttgaatcccctc-gaaacgtttttt 14533687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 20612962 - 20613051
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataact 280  Q
    |||||| ||||||||| ||||| | |||||||||||||||  |||||||||||| ||||  |||||||  | ||| ||||| ||||||||    
T  20612962 gtggcggatcttgagtaaattttttgggggtgccaaacttccatggaatatatattaaacagttttaataactaaaaataaataataact 20613051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 218 - 388
Target Start/End: Original strand, 14735461 - 14735639
Alignment:
Q  218 gggtgccaaacttttatggaatatataataaatgg------ttttaagcattaacaataattaataactgattaagtggtataaaatgttttaaaggagc 311  Q
    |||||| |||||||||||||||||||| |||| ||      ||| ||| | ||||||||||||||||||||   |||| |||||| ||||||||||||||    
T  14735461 gggtgctaaacttttatggaatatatattaaaaggaaacggtttcaagaaataacaataattaataactgacctagtgatataaattgttttaaaggagc 14735560  T
Q  312 aagtggatgtgagtttgaatcccctcaaaaacgttttttacat--atacaatatgcaaaagtagaagattaaatatgta 388  Q
    |||  ||||||  || ||||||||| |||||||||||||   |  ||| |||||| |||||||||||||||||||||||    
T  14735561 aagaagatgtggattcgaatccccttaaaaacgtttttttttttaataaaatatgtaaaagtagaagattaaatatgta 14735639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 396
Target Start/End: Original strand, 17623267 - 17623372
Alignment:
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgttttttacatatacaatatgcaaaagtagaagattaaatatgtata 390  Q
    |||||||||||||||||||||||| | | ||| ||| |||||||||||| ||| ||| ||  | ||||||||||| |   |||||||||||| ||||| |    
T  17623267 tataaaatgttttaaaggagcaagagtaagtgggttcgaatcccctcaagaacttttcttttaaatacaatatgctatgatagaagattaaacatgtaaa 17623366  T
Q  391 aagaag 396  Q
    ||||||    
T  17623367 aagaag 17623372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 38972224 - 38972305
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataac 279  Q
    |||||||||||| |||| |||| |||||||| | ||||||||||||| |||||||||| ||| | || |||| |||||||||    
T  38972224 atcttgagttaaattgttggggatgccaaacatatatggaatatatattaaatggtttcaagaaatatcaattattaataac 38972305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 9615684 - 9615749
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttt-tatggaatatataataaatggttt 255  Q
    |||||| |||||||||||| || | |||||||||||| ||| ||||||||||||| ||||||||||    
T  9615684 gtggcggatcttgagttaaattcttgggggtgccaaaatttctatggaatatatattaaatggttt 9615749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 348
Target Start/End: Original strand, 38575569 - 38575725
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtgg 290  Q
    |||||| ||||| | ||||||||| ||||  ||||||||| |||| |||||||| ||||| |||||||| | ||  ||| ||||||||||| |  |||||    
T  38575569 gtggcggatcttaacttaatttgttggggc-gccaaacttctatgaaatatatattaaatagttttaagaagtagtaatgattaataactggtctagtgg 38575667  T
Q  291 tataaaatgttttaaaggagcaagtggatgtgagtttgaatcccctcaaaaacgtttt 348  Q
    | | || ||||| |||| |||||| | ||||| |||  |||||| ||||||| |||||    
T  38575668 tgtgaattgtttgaaagtagcaagagaatgtgggttcaaatcccatcaaaaatgtttt 38575725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 4056215 - 4056295
Alignment:
Q  198 atcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataa 278  Q
    |||||||||||| || | |||||||||||| || |||| |||||||| |||||||||| |||   ||| ||||||||||||    
T  4056215 atcttgagttaaattcttgggggtgccaaatttctatgaaatatatattaaatggtttcaagatataataataattaataa 4056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 4580556 - 4580620
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||| |||||||||||| |||| ||||||||||||  | |||| |||||||| ||||||||||    
T  4580556 gtggcggatcttgagttaaattgttgggggtgccaaatatatatgaaatatatattaaatggttt 4580620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 313
Target Start/End: Complemental strand, 1315221 - 1315114
Alignment:
Q  206 ttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaatgttttaa 305  Q
    |||| |||| ||||||||||||| | |||| |||||||| |||||||||||||  | || |||| ||||||||| | |  |||||||| || || |||||    
T  1315221 ttaaattgttgggggtgccaaacatatatgaaatatatattaaatggttttaaaaaatatcaattattaataaccgttctagtggtatgaattgatttaa 1315122  T
Q  306 aggagcaa 313  Q
    || |||||    
T  1315121 agaagcaa 1315114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 6590470 - 6590406
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||| ||||||| ||||||| |||||||||||||| || || | |||||||| ||| ||||||    
T  6590470 gtggcggatcttgaattaatttttcgggggtgccaaatttctacgtaatatatattaactggttt 6590406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 30076220 - 30076300
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataa 271  Q
    |||||| ||||||||| ||||| |  || |||||||||||  |||||||||||| ||||  |||||||  |||||||||||    
T  30076220 gtggcggatcttgagtaaattttttaggagtgccaaacttccatggaatatatattaaacagttttaaaaattaacaataa 30076300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 16717262 - 16717200
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggt 253  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  16717262 gtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatattaaatggt 16717200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 19645515 - 19645453
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggt 253  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  19645515 gtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatattaaatggt 19645453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 342
Target Start/End: Original strand, 32633002 - 32633143
Alignment:
Q  201 ttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttttaagcattaacaataattaataactgattaagtggtataaaatgt 300  Q
    |||||||| ||||| ||||||||||| | | |||| |||||||| |||| ||||| ||| | ||||||||||||||||| | |  ||||||||||| |||    
T  32633002 ttgagttattttgttgggggtgccaatcatctatgtaatatatattaaacggtttcaagaagtaacaataattaataaccggtctagtggtataaattgt 32633101  T
Q  301 tttaaaggagcaagtggatgtgagtttgaatcccctcaaaaa 342  Q
    || |||| |||||| | ||||| ||| ||||||||| |||||    
T  32633102 ttgaaagaagcaagagaatgtgggttcgaatcccctaaaaaa 32633143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 15107862 - 15107796
Alignment:
Q  188 acggtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    ||||||||| ||||| | ||||||||| |||| || ||||||| ||||||||||||| ||||||||||    
T  15107862 acggtggcggatcttcaattaatttgttgggg-tgtcaaacttctatggaatatatattaaatggttt 15107796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 19763 - 19827
Alignment:
Q  191 gtggcgaatcttgagttaatttgtcgggggtgccaaacttttatggaatatataataaatggttt 255  Q
    |||||| ||||||| |||| |||| ||||||||||||||| |||| |||||||| ||||||||||    
T  19763 gtggcggatcttgacttaaattgttgggggtgccaaacttctatgtaatatatattaaatggttt 19827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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