View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9448_low_9 (Length: 417)

Name: NF9448_low_9
Description: NF9448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9448_low_9
NF9448_low_9
[»] chr3 (4 HSPs)
chr3 (8-212)||(2683795-2683996)
chr3 (210-401)||(2685121-2685311)
chr3 (103-214)||(2693739-2693850)
chr3 (146-184)||(25532039-25532077)
[»] chr8 (1 HSPs)
chr8 (146-214)||(8366510-8366578)
[»] chr7 (4 HSPs)
chr7 (146-214)||(9595649-9595717)
chr7 (146-214)||(9646612-9646680)
chr7 (146-205)||(7843079-7843138)
chr7 (146-214)||(9647148-9647216)
[»] chr4 (9 HSPs)
chr4 (146-214)||(39488363-39488431)
chr4 (146-214)||(13518173-13518241)
chr4 (146-214)||(15019496-15019564)
chr4 (146-214)||(9167056-9167124)
chr4 (146-214)||(15017856-15017924)
chr4 (150-214)||(19459737-19459801)
chr4 (150-214)||(19460563-19460627)
chr4 (146-214)||(19458032-19458100)
chr4 (153-210)||(19456334-19456390)
[»] scaffold0269 (1 HSPs)
scaffold0269 (146-214)||(1616-1684)
[»] chr5 (3 HSPs)
chr5 (146-214)||(244654-244722)
chr5 (146-214)||(29949987-29950055)
chr5 (146-214)||(29951625-29951693)
[»] chr2 (1 HSPs)
chr2 (146-214)||(22300109-22300177)
[»] chr1 (3 HSPs)
chr1 (146-214)||(20190643-20190711)
chr1 (146-214)||(24157267-24157335)
chr1 (146-205)||(36233708-36233767)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 2683795 - 2683996
Alignment:
Q  8 ataattcttagaaaaatcaagtggaaggaatcatgaagaatctggagagaaaaacgtgtggcgcacaataaaaaggaagttcagacaagatagttcacct 107  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  2683795 ataattcttagacaaatcaagtggaaagaatcatgaagaatctggagagaaaaacgtggggcgcacaataaaaaggaagttcagacaagatagtccacct 2683894  T
Q  108 ctaattttatgtttattttttaacctcttttgtaaaattcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttca 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  2683895 ctaattttatgtttattttttaacctcttttgtaaaattcagccaccaaaacattattgaaat---tagctgcatttccgttcattttctaagagtttca 2683991  T
Q  208 gaatc 212  Q
    |||||    
T  2683992 gaatc 2683996  T

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Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 210 - 401
Target Start/End: Original strand, 2685121 - 2685311
Alignment:
Q  210 atcaaggatgtgattgtaccacactcaatatctctttcaagttgtttatgtgaaggttttagatgttgaaatgagactttgtccatgtataaatcaaatt 309  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2685121 atcaaggatgt-attgtaccacactcaatatctctttcgagttgtttatgtgaaggttttagatgttgaaatgagactttgtccatgtataaatcaaatt 2685219  T
Q  310 aatgttgtgccatacacaagttttacttttcaccattggatgattaaatttcattatttcttatttgttctttggtaggaacactattgggt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  2685220 aatgttgtgccatacacaagttttacttttcaccattggatgaataaatttcataatttcttatttgttctttggtaggaacactattgggt 2685311  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 2693739 - 2693850
Alignment:
Q  103 cacctctaattttatgtttattttttaacctcttttgtaaaattcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagag 202  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||||||  |||||||||| |||| ||||||| | ||||||| | || ||||||||||||    
T  2693739 cacctcttatttcatgtttattttgtaacctcttttgtaaaattcagttaccaaaacataattgcaattagtggttgcatttacttttattttctaagag 2693838  T
Q  203 tttcagaatcaa 214  Q
    ||||||||||||    
T  2693839 tttcagaatcaa 2693850  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 25532039 - 25532077
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcattt 184  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  25532039 tcagccaccaaaacattattgtaattagtggctgcattt 25532077  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 8366510 - 8366578
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  8366510 tcagccaccaaaacattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 8366578  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 9595717 - 9595649
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  9595717 tcagccaccaaaacattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 9595649  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 9646680 - 9646612
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  9646680 tcagccaccaaaacattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 9646612  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 7843079 - 7843138
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagttt 205  Q
    ||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  7843079 tcagccaccaaaacattattgtaattagtggctgcatttcctttcattttctaagagttt 7843138  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 9647216 - 9647148
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  9647216 tcagccaccaaaaaattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 9647148  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 39488431 - 39488363
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  39488431 tcagccaccaaaacattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 39488363  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 13518241 - 13518173
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  13518241 tcagccaccaaaaaattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 13518173  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 15019564 - 15019496
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||| ||| ||||    
T  15019564 tcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 15019496  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 9167056 - 9167124
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| | || |||||| |||||||||||||||||| ||| ||||    
T  9167056 tcagccaccaaaacattattgtaattagtggttggatttcctttcattttctaagagttttagagtcaa 9167124  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 15017924 - 15017856
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| | ||||||| | |||||||||||||||||| ||| ||||    
T  15017924 tcagccaccaaaacattattgtaattagtggttgcattttctttcattttctaagagttttagagtcaa 15017856  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 19459737 - 19459801
Alignment:
Q  150 ccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||| ||||| | | ||||||||| |||||||||||||||||| ||||||||    
T  19459737 ccaccaaaacattattgcaattaatggatgcatttcctttcattttctaagagttttagaatcaa 19459801  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 19460627 - 19460563
Alignment:
Q  150 ccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||| ||||||||    
T  19460627 ccaccaaaacattattgtaattagtggctgcatttcatttcattttcaaagagttttagaatcaa 19460563  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 19458032 - 19458100
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    |||||||| |||||||||||| ||||||| ||| || |||| |||||||||||||||| | ||||||||    
T  19458032 tcagccactaaaacattattggaattagtggctacacttcctttcattttctaagagtgttagaatcaa 19458100  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 19456334 - 19456390
Alignment:
Q  153 ccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaa 210  Q
    |||||||||||||| ||||||||| ||||||||| |||| ||||||||||||| ||||    
T  19456334 ccaaaacattattgcaattagtagatgcatttcctttca-tttctaagagttttagaa 19456390  T

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Target: scaffold0269 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 1684 - 1616
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||| ||| ||||    
T  1684 tcagccaccaaaacattattgtaattaatggctgcatttcctttcattttctaagagttttagagtcaa 1616  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 244722 - 244654
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||| ||| ||||    
T  244722 tcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 244654  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 29949987 - 29950055
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||| ||| ||||    
T  29949987 tcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 29950055  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 29951625 - 29951693
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||| ||| ||||    
T  29951625 tcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttttagagtcaa 29951693  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 22300177 - 22300109
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||| ||| ||||    
T  22300177 tcagccaccaaaacattattgtaattaatggctgcatttcctttcattttctaagagttttagagtcaa 22300109  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 20190711 - 20190643
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    |||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||| ||| ||||    
T  20190711 tcagccaccaaatcattattgtaattagtggctgcatttcctttcattttctaagagttttagagtcaa 20190643  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 24157335 - 24157267
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagtttcagaatcaa 214  Q
    ||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||| ||| ||||    
T  24157335 tcagccaccaaaacattattgtaattagtggctgcatttgctttcattttctaagagttttagagtcaa 24157267  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 36233708 - 36233767
Alignment:
Q  146 tcagccaccaaaacattattgaaattagtagctgcatttccgttcattttctaagagttt 205  Q
    ||||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||    
T  36233708 tcagccaccaaaacattattgtaattagtggttgcatttcctttcattttctaagagttt 36233767  T

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