View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9449_high_2 (Length: 330)
Name: NF9449_high_2
Description: NF9449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9449_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 17116855 - 17117157
Alignment:
| Q |
18 |
ggacatgggataccaaagtgcacaaagacacaccaatagttctaattatagtttagcactatatttatttcaaatacatgaattatactttatatataag |
117 |
Q |
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| T |
17116855 |
ggacatgggataccaaagtgcacaaagacacaccaatagttctaattatagtttagcactatatttatttcaaatacatgaattatactttatatataag |
17116954 |
T |
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| Q |
118 |
gtttgatatttgcacgttatattttcccctatatcacactttatgatgagcccatacattaaagctccatgaaggtgaaaacccttatcttttatgtatg |
217 |
Q |
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| T |
17116955 |
gtttgatatttgcacgttatattttcccctatatcacacttgatgatgagcccatacattaaagctctatgaaggtgaaaacccttatcttttatgtatg |
17117054 |
T |
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| Q |
218 |
gttttgaacgtgatgtaatataaaggagaaataatgtgcatatacaactagataaaatctagatgacacaaggatggtcaaaagactcatccacaacagt |
317 |
Q |
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| T |
17117055 |
g-tttgaacgtgatgtaatataaaggagaaataatgtgcatatacaactagataaaatctagatgacacaaggatggtcaacagactcatccacaacatt |
17117153 |
T |
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| Q |
318 |
atta |
321 |
Q |
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|||| |
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| T |
17117154 |
atta |
17117157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 17107789 - 17107683
Alignment:
| Q |
52 |
aatagttctaattatagtttagcactatatttatttcaaatacatgaattatactttatatataaggtttgatatttgcacgttatattttcccctatat |
151 |
Q |
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|||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||| |||||| ||||||||| |
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| T |
17107789 |
aatagttctaatta--gttaagaactatatttatttcaaatacatggattatactttatacacaaggtttgttatttgcacaaaatatttccccctatat |
17107692 |
T |
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| Q |
152 |
cacacttta |
160 |
Q |
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| T |
17107691 |
caaacttta |
17107683 |
T |
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