View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9449_low_10 (Length: 305)
Name: NF9449_low_10
Description: NF9449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9449_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 32876325 - 32876604
Alignment:
| Q |
16 |
acatcacttaaattgagaattaccaccaataccaataagaaacctaactaccaaaatcaaaggcaatacctaaaaacaaacccaaactcccacacttcct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32876325 |
acatcacttaaattgagaattaccaccaataccaataagaaacctaactaccaaaatcaaaggcaatacctaaaaacaaacccaaactcccacacttcct |
32876424 |
T |
|
| Q |
116 |
catgagtggctatagaaacaaaattcaatcacctatcgaatgctaccataacccctccaataaaataaaacccttgaaaacagaagcttaacttcgcatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32876425 |
catgagtggctatagaaacaaaattcaatcacctatcgaatgctaccataacccctccaataaaataaaacccttgaaaacagaagcttaacttcgcatc |
32876524 |
T |
|
| Q |
216 |
accacaactaagcccaattaaataccagaccaatgacttattccaacacgctttcagattccaccaccgctcgttctctg |
295 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32876525 |
accacaactaagcccaattaaacactagaccaatgacttattccaacacgctttcagattccaccaccgctcgttctctg |
32876604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 15676745 - 15676820
Alignment:
| Q |
213 |
atcaccacaactaagcccaattaaataccagaccaatgacttattccaacacgctttcagattccaccaccgctcg |
288 |
Q |
| |
|
||||||| || | |||||||||||||| | || |||||||||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
15676745 |
atcaccataaatgagcccaattaaatatctgaacaatgacttattccaacattctttcatattccaccaccactcg |
15676820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 27044070 - 27044025
Alignment:
| Q |
24 |
taaattgagaattaccaccaataccaataagaaacctaactaccaa |
69 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
27044070 |
taaattgagagctaccaccaaccccaataagaaacctaactaccaa |
27044025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University