View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9449_low_12 (Length: 279)
Name: NF9449_low_12
Description: NF9449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9449_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 26128308 - 26128412
Alignment:
| Q |
11 |
cacagagtcacaccaacaaaatttcattaggaaccactctctcaaaaaacttgcatcaatctttcaaaaaccaaagtcagaattgaaacacgtatctttc |
110 |
Q |
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| T |
26128308 |
cacagagtcacaccaacaaaaattcatcaggaaccaatctcacaaaaaacttgcatcaatctttcaacaaccaaagtcagaattgaaacacgtatctttc |
26128407 |
T |
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| Q |
111 |
tttct |
115 |
Q |
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||||| |
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| T |
26128408 |
tttct |
26128412 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 26128513 - 26128552
Alignment:
| Q |
216 |
tgttctaaacgaacaacaaaggccacaagcaatttcaagc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26128513 |
tgttctaaacgaacaacaaaggccacaagcaatttcaagc |
26128552 |
T |
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