View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9449_low_14 (Length: 265)
Name: NF9449_low_14
Description: NF9449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9449_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 1865855 - 1865618
Alignment:
| Q |
20 |
aatagttcattagaagaagtctttgtatgatccagaattgctccattcatagaacgtgagttaggttcaacattagtgattggtgtaacagatgcatctc |
119 |
Q |
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| T |
1865855 |
aatagttcattagaagaagtctttgtatgatccagaattgctccattcacagaacgtgagttaggttcaacattagtgattggtgtaacatatgcatctc |
1865756 |
T |
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| Q |
120 |
cgatatttggattaacccc-gcaacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgccccccaactgat |
218 |
Q |
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| T |
1865755 |
cgatatttggattaacccccgcaacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgccccccaactgat |
1865656 |
T |
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| Q |
219 |
tccttgttgtagactcatgtttgtattttgagtattat |
256 |
Q |
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| T |
1865655 |
tccttgttgtagactcatgtttgtattttgagtattat |
1865618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 113 - 256
Target Start/End: Complemental strand, 1865510 - 1865366
Alignment:
| Q |
113 |
gcatctccgatatttggattaaccccg-caacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgcccccc |
211 |
Q |
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| T |
1865510 |
gcatctccgatatttggattaacctctacagcttttccatcaatgccaaacatgagaggagaagaacttgaatatccaggttttgatatgtttgcccccc |
1865411 |
T |
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| Q |
212 |
aactgattccttgttgtagactcatgtttgtattttgagtattat |
256 |
Q |
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| T |
1865410 |
cactgattccttgttgtagactcatgtttgtattttgagtattat |
1865366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 253
Target Start/End: Original strand, 35440700 - 35440813
Alignment:
| Q |
140 |
caacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgccccccaactgattccttgttgtagactcatgtt |
239 |
Q |
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|||| ||||||| ||||||||||||| |||||||| |||||||||||| |||||||||| |||| ||| | | ||||||||||||| | || |||||| |
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| T |
35440700 |
caacatttccatgagcaccaaacatgtgaggagaataacttgaatatccaggttttgatgtgttcatcccaccattgattccttgttgcacacccatgtt |
35440799 |
T |
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| Q |
240 |
tgtattttgagtat |
253 |
Q |
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||| || ||||||| |
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| T |
35440800 |
tgtgttatgagtat |
35440813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 35440916 - 35440960
Alignment:
| Q |
140 |
caacttttccatcagcaccaaacatgagaggagaagaacttgaat |
184 |
Q |
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| T |
35440916 |
caacttttccatcagcaccaaacatgtgaggagaaaaacttgaat |
35440960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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