View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9449_low_16 (Length: 249)

Name: NF9449_low_16
Description: NF9449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9449_low_16
NF9449_low_16
[»] chr2 (11 HSPs)
chr2 (23-241)||(45662531-45662749)
chr2 (27-241)||(45053952-45054167)
chr2 (23-215)||(45661083-45661279)
chr2 (75-227)||(45275999-45276149)
chr2 (41-165)||(41753962-41754086)
chr2 (125-218)||(41752880-41752974)
chr2 (124-215)||(6467002-6467094)
chr2 (108-179)||(45659914-45659985)
chr2 (41-150)||(5788067-5788176)
chr2 (131-191)||(38796884-38796945)
chr2 (125-173)||(20444190-20444238)
[»] chr8 (15 HSPs)
chr8 (16-227)||(15275905-15276116)
chr8 (16-227)||(15456274-15456485)
chr8 (23-227)||(43215445-43215653)
chr8 (124-239)||(760760-760875)
chr8 (110-222)||(36990356-36990468)
chr8 (76-173)||(38291808-38291905)
chr8 (46-209)||(18431472-18431636)
chr8 (126-218)||(13758981-13759074)
chr8 (41-165)||(23141597-23141721)
chr8 (83-220)||(42797031-42797169)
chr8 (89-210)||(45528243-45528365)
chr8 (125-173)||(19263304-19263352)
chr8 (46-113)||(17871244-17871311)
chr8 (125-218)||(23140510-23140604)
chr8 (146-210)||(38291332-38291397)
[»] chr3 (8 HSPs)
chr3 (23-241)||(9266700-9266918)
chr3 (27-216)||(14240478-14240671)
chr3 (60-219)||(9265297-9265457)
chr3 (108-179)||(6437631-6437702)
chr3 (108-210)||(10974887-10974989)
chr3 (46-218)||(12125400-12125573)
chr3 (125-173)||(50441-50489)
chr3 (123-179)||(20934181-20934237)
[»] chr4 (10 HSPs)
chr4 (39-223)||(13909790-13909975)
chr4 (23-226)||(24180570-24180777)
chr4 (46-215)||(42756724-42756894)
chr4 (125-218)||(12576822-12576916)
chr4 (142-206)||(28474803-28474868)
chr4 (127-210)||(285179-285263)
chr4 (56-179)||(35648517-35648640)
chr4 (108-178)||(24181718-24181788)
chr4 (131-179)||(17675227-17675275)
chr4 (125-173)||(22681165-22681213)
[»] chr7 (9 HSPs)
chr7 (23-229)||(6202302-6202515)
chr7 (39-219)||(38788041-38788222)
chr7 (58-190)||(17510083-17510216)
chr7 (58-190)||(17542998-17543131)
chr7 (46-143)||(42078938-42079037)
chr7 (90-199)||(4110283-4110393)
chr7 (58-190)||(17474599-17474732)
chr7 (58-190)||(17578482-17578615)
chr7 (123-171)||(4109578-4109626)
[»] scaffold0191 (3 HSPs)
scaffold0191 (27-220)||(12170-12367)
scaffold0191 (108-179)||(11650-11721)
scaffold0191 (145-206)||(6025-6087)
[»] scaffold0169 (1 HSPs)
scaffold0169 (123-222)||(5204-5303)
[»] scaffold1315 (1 HSPs)
scaffold1315 (75-215)||(1295-1436)
[»] scaffold1293 (1 HSPs)
scaffold1293 (75-215)||(635-776)
[»] scaffold0380 (1 HSPs)
scaffold0380 (46-220)||(15272-15447)
[»] chr1 (3 HSPs)
chr1 (46-215)||(31089445-31089616)
chr1 (108-179)||(16853684-16853755)
chr1 (132-179)||(7844559-7844606)
[»] scaffold0021 (1 HSPs)
scaffold0021 (108-210)||(127516-127618)
[»] scaffold0061 (2 HSPs)
scaffold0061 (124-218)||(45555-45650)
scaffold0061 (108-174)||(44875-44941)
[»] scaffold0050 (1 HSPs)
scaffold0050 (94-196)||(10561-10664)
[»] scaffold0017 (2 HSPs)
scaffold0017 (124-218)||(153137-153232)
scaffold0017 (108-174)||(153846-153912)
[»] chr6 (4 HSPs)
chr6 (123-173)||(18089938-18089988)
chr6 (41-165)||(1599843-1599967)
chr6 (124-219)||(10631155-10631251)
chr6 (108-215)||(26595850-26595958)
[»] chr5 (3 HSPs)
chr5 (125-220)||(9048702-9048798)
chr5 (179-220)||(33013058-33013099)
chr5 (123-220)||(24541865-24541964)
[»] scaffold1312 (1 HSPs)
scaffold1312 (56-179)||(8-131)
[»] scaffold0284 (1 HSPs)
scaffold0284 (46-173)||(7539-7666)
[»] scaffold1782 (1 HSPs)
scaffold1782 (90-178)||(1277-1365)
[»] scaffold1933 (1 HSPs)
scaffold1933 (125-215)||(484-575)
[»] scaffold0024 (1 HSPs)
scaffold0024 (111-220)||(46239-46349)
[»] scaffold0159 (1 HSPs)
scaffold0159 (41-150)||(32440-32549)
[»] scaffold1743 (1 HSPs)
scaffold1743 (125-173)||(188-236)
[»] scaffold0377 (1 HSPs)
scaffold0377 (75-143)||(12532-12600)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 45662531 - 45662749
Alignment:
Q  23 aagattctcacacttaagaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  45662531 aagattctcacacttaagaagaagttaatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtc 45662630  T
Q  123 caatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggtttctcttagacaaatgtaatgatccaactcattgtaggtt 222  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45662631 caatatacgtaatgtcttaagattttgaatgaagatgtggtgtcaatctcaattgtgggtttctcttaaacaaatgtaatgatccaactcattgtaggtt 45662730  T
Q  223 tcctcgtaactccaaactc 241  Q
    ||||| |||||||||||||    
T  45662731 tcctcataactccaaactc 45662749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 45054167 - 45053952
Alignment:
Q  27 ttctcacacttaagaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaat 126  Q
    ||||||||||||   |||||||||||||||||||||||| ||||||||||||||||| | || ||||||||| ||||||| ||||||| |||| ||||||    
T  45054167 ttctcacacttagagagaagttaatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataagtgagatattcaat 45054068  T
Q  127 atacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgtaggtttcc 225  Q
    |||||| ||| |||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| || |    
T  45054067 atacctgatgtcttaagattttgaatgaagatgtggtgtcaatctcatttgtggggtttcacttagacaaatgtaatgatccaactcattgtaggctttc 45053968  T
Q  226 tcgtaactccaaactc 241  Q
    || || ||| ||||||    
T  45053967 tcatagctctaaactc 45053952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 45661083 - 45661279
Alignment:
Q  23 aagattctcacactta---agaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagat 119  Q
    ||||||||||||||||   |||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||  |||||| ||||||| ||||    
T  45661083 aagattctcacacttatagagaataagttaatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagat 45661182  T
Q  120 gttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcatt 215  Q
    || |||||||| ||||| |||||| ||||||||||| |||| |||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  45661183 gtccaatatacttaatgtcttaagattttgaatgaaaatgtagtgtcaatctcatttatggggtttctcttagacaaatgtaatgatccaactcatt 45661279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 45275999 - 45276149
Alignment:
Q  75 tacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaa 174  Q
    ||||||||||| ||||||| | ||  | |||||| ||||| |||||  |||||||| |||||  |||||||||||| ||||||| |||||||| | |||     
T  45275999 tacatttgatgcaagagtagacattaaacaacgtgtaagtgagatgaccaatatacttaatg--ttaaggttttgagtgaagatatggtgtcagtatcat 45276096  T
Q  175 ttgtgggtttctcttagacaaatgtaatgatccaactcattgtaggtttcctc 227  Q
    |||| ||||||| |||| |||| || ||||| |||| ||||||| ||| ||||    
T  45276097 ttgttggtttcttttagtcaaacgtgatgattcaacccattgtatgttccctc 45276149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 41754086 - 41753962
Alignment:
Q  41 aagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgactt 140  Q
    |||| ||||||||| ||||||| |  ||| ||| ||||||  ||||||||||| |||| ||||||| ||||||| |||||   |||||| | |||| |||    
T  41754086 aagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataagtgagatgactaatatatccaatgtctt 41753987  T
Q  141 aaggttttgaatgaagatgtggtgt 165  Q
    ||||||||||||  |||||||||||    
T  41753986 aaggttttgaatttagatgtggtgt 41753962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 41752974 - 41752880
Alignment:
Q  125 atatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtggg-tttctcttagacaaatgtaatgatccaactcattgta 218  Q
    |||||||||||| ||||||||||||  | || ||||||||||||||||| || ||||  ||||||||| | ||| | ||||| ||||||||||||    
T  41752974 atatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatttatgggaattctcttagccgaatatgatgattcaactcattgta 41752880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 6467002 - 6467094
Alignment:
Q  124 aatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcatt 215  Q
    |||||| |||||| |||||| ||||| ||| ||||||||||||||||||| || |  |||||||||||  ||||| | ||||||||| |||||    
T  6467002 aatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatccaagtcatt 6467094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 45659914 - 45659985
Alignment:
Q  108 tataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg 179  Q
    ||||||| ||||| ||||||||| | |||  |||||||||||  ||| | ||||||||||||||||||||||    
T  45659914 tataagtgagatgatcaatatacatgatgctttaaggttttgggtgatggtgtggtgtcaatctcaattgtg 45659985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 5788176 - 5788067
Alignment:
Q  41 aagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgactt 140  Q
    |||| ||||||||| || ||||||  ||| ||| ||||||  ||||||||||| |||| ||||||| ||||||| |||||   |||||||  || | |||    
T  5788176 aagacgttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaaatatactcaaagtctt 5788077  T
Q  141 aaggttttga 150  Q
    ||||||||||    
T  5788076 aaggttttga 5788067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 38796884 - 38796945
Alignment:
Q  131 ctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg-ggtttctcttag 191  Q
    |||||| |||||| ||||||| ||||||||||||||||  ||||||||| |||| |||||||    
T  38796884 ctaatgccttaagattttgaaagaagatgtggtgtcaacatcaattgtgtggttgctcttag 38796945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 20444190 - 20444238
Alignment:
Q  125 atatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctca 173  Q
    |||||||||||| |||||||||| | |||||||| ||||||||| ||||    
T  20444190 atatacctaatgccttaaggtttaggatgaagatatggtgtcaaactca 20444238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 15276116 - 15275905
Alignment:
Q  16 agacgttaagattctcacacttaagaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagta 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15276116 agacgctaagattctcacacttaagaagaagttaatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagta 15276017  T
Q  116 agatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggtttctcttagacaaatgtaatgatccaactcatt 215  Q
    |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15276016 agatgtccaatatacctaatgtcttaaggtttcgaatgaagatgtggtgtcaatctcatttgtgggtttctcttagacaaatgtaatgatccaactcatt 15275917  T
Q  216 gtaggtttcctc 227  Q
    ||||| ||||||    
T  15275916 gtaggcttcctc 15275905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 15456485 - 15456274
Alignment:
Q  16 agacgttaagattctcacacttaagaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagta 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15456485 agacgctaagattctcacacttaagaagaagttaatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagta 15456386  T
Q  116 agatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggtttctcttagacaaatgtaatgatccaactcatt 215  Q
    |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15456385 agatgtccaatatacctaatgtcttaaggtttcgaatgaagatgtggtgtcaatctcatttgtgggtttctcttagacaaatgtaatgatccaactcatt 15456286  T
Q  216 gtaggtttcctc 227  Q
    ||||| ||||||    
T  15456285 gtaggcttcctc 15456274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 43215653 - 43215445
Alignment:
Q  23 aagattctcacactta---agaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagat 119  Q
    ||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||  |||||| ||||||| ||||    
T  43215653 aagattctcacacttatagagaagaagttaatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagat 43215554  T
Q  120 gttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgta 218  Q
    || |||||||| ||||| |||| ||||||||||||| |||| |||||||||||| || | ||||| ||||||||||||||||||||||||||| ||||||    
T  43215553 gtccaatatacttaatgtcttacggttttgaatgaaaatgtagtgtcaatctcatttatggggttcctcttagacaaatgtaatgatccaacttattgta 43215454  T
Q  219 ggtttcctc 227  Q
    || ||||||    
T  43215453 ggcttcctc 43215445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 760760 - 760875
Alignment:
Q  124 aatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggtttctcttagacaaatgtaatgatccaactcattgtaggttt 223  Q
    ||||||||||||| ||||   ||||||||||| ||||||||||||| ||| || | |||||||| ||| ||||||| ||||| ||||||||||||||||     
T  760760 aatatacctaatgtcttactattttgaatgaatatgtggtgtcaatatcattttttggtttctcctagtcaaatgtgatgattcaactcattgtaggttc 760859  T
Q  224 cctcgtaactccaaac 239  Q
     ||| |||||||||||    
T  760860 tctcataactccaaac 760875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 36990356 - 36990468
Alignment:
Q  110 taagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggtttctcttagacaaatgtaatgatccaa 209  Q
    ||||| |||||  |||||||  ||||| ||||||||||||| |||| ||||||||||||| ||| |||| |||||||||||| ||||||| || || |||    
T  36990356 taagtgagatgaccaatatatgtaatgtcttaaggttttgagtgaatatgtggtgtcaatatcatttgttggtttctcttagtcaaatgtgattattcaa 36990455  T
Q  210 ctcattgtaggtt 222  Q
      |||||||||||    
T  36990456 tacattgtaggtt 36990468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 38291808 - 38291905
Alignment:
Q  76 acatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctca 173  Q
    |||||||||| ||||||  | || ||| ||| ||||||| | ||  ||||||||||||||| |||||||||||| |||||||||| ||||||||||||    
T  38291808 acatttgatgcaagagtggacattgagaaacatataagtgaaattatcaatatacctaatgtcttaaggttttggatgaagatgtcgtgtcaatctca 38291905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 18431636 - 18431472
Alignment:
Q  46 gttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggt 145  Q
    ||||||||| |||||||||| ||| ||| ||  ||||||| ||||||| |||| ||||||| ||||  | |||||  |||||||||||||| ||| ||||    
T  18431636 gttaatgtgtcatgtgtgagttaaacttctaattttgatgcaagagtatatattgagcaacatatatttgagatgaccaatatacctaatgtcttcaggt 18431537  T
Q  146 tttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaa 209  Q
    ||   ||  |||||||||||| |||| | |||| |||||||||||   ||||||| |||||||||    
T  18431536 ttgagatagagatgtggtgtccatcttacttgtggggtttctcttgttcaaatgtgatgatccaa 18431472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 13758981 - 13759074
Alignment:
Q  126 tatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgta 218  Q
    ||||||||||| ||||||||||||  | || ||||||||||||||||| |||| ||| ||||||||| | ||| | ||||| ||||||||||||    
T  13758981 tatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatttgtggggattctcttagccgaatatgatgattcaactcattgta 13759074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 23141721 - 23141597
Alignment:
Q  41 aagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgactt 140  Q
    |||| ||||||||| ||||||| |  ||| ||| ||||||  ||||||||||| |||| ||||||| || |||| |||||   |||||| | |||| |||    
T  23141721 aagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatacaagtgagatgactaatatatccaatgtctt 23141622  T
Q  141 aaggttttgaatgaagatgtggtgt 165  Q
    ||||||||||||  |||||||||||    
T  23141621 aaggttttgaatttagatgtggtgt 23141597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 42797169 - 42797031
Alignment:
Q  83 atgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-ggg 181  Q
    ||||||||||| |||| ||||||| ||||||| |||||   |||||  | |||| |||||||||||||||  ||||||||||| ||| |||  ||| |||    
T  42797169 atgtaagagtagatattgagcaacatataagtgagatgactaatatttccaatgtcttaaggttttgaatttagatgtggtgtgaatttcacgtgtgggg 42797070  T
Q  182 tttctcttagacaaatgtaatgatccaactcattgtagg 220  Q
    ||| |||| | |||||| ||||||| |||  ||||||||    
T  42797069 tttttcttggtcaaatgcaatgatcaaacctattgtagg 42797031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 45528243 - 45528365
Alignment:
Q  89 gagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctc 187  Q
    ||||| |||| ||||||| ||||| | |||||   ||||||||||||| |||||| |||||  ||||||| ||||||  |||||| |||| |||||||||    
T  45528243 gagtatatattgagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtgtatctcacttgtggggtttctc 45528342  T
Q  188 ttagacaaatgtaatgatccaac 210  Q
    |||  ||||||| ||||| ||||    
T  45528343 ttaatcaaatgtgatgattcaac 45528365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 19263352 - 19263304
Alignment:
Q  125 atatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctca 173  Q
    |||||||||||| |||||||||| | ||| |||||||||||||||||||    
T  19263352 atatacctaatgtcttaaggtttaggatggagatgtggtgtcaatctca 19263304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 17871244 - 17871311
Alignment:
Q  46 gttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataag 113  Q
    ||||||||| || ||||||| |||  |||||||||  |||||||||||||||| ||||||| ||||||    
T  17871244 gttaatgtgtcaagtgtgagttaaagttttacattgaatgtaagagtaaatattgagcaacatataag 17871311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 23140604 - 23140510
Alignment:
Q  125 atatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtggg-tttctcttagacaaatgtaatgatccaactcattgta 218  Q
    |||||||||||| ||||||||||||  | || ||||||||||||| ||| || ||||  ||||||||| | ||| | ||||| ||||||||||||    
T  23140604 atatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatttcatttatgggaattctcttagccgaatatgatgattcaactcattgta 23140510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 38291332 - 38291397
Alignment:
Q  146 tttgaatgaagatgtggtgtcaatctcaattgtggg-tttctcttagacaaatgtaatgatccaac 210  Q
    |||| ||| ||||||||||||||||| | || |||| |||||||||| ||||||| ||||||||||    
T  38291332 tttggatgcagatgtggtgtcaatcttatttatgggatttctcttagtcaaatgtgatgatccaac 38291397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 9266700 - 9266918
Alignment:
Q  23 aagattctcacacttaagaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  9266700 aagattctcacacttaagaagaagttaatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtc 9266799  T
Q  123 caatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggtttctcttagacaaatgtaatgatccaactcattgtaggtt 222  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||||| |    
T  9266800 caatatacctaatgtcttaaggttttgaatgaaaatgtggtgtcaatctcatttgcgggtttctcttagacaaatacaatgatccaactcattgtaggct 9266899  T
Q  223 tcctcgtaactccaaactc 241  Q
    ||||| ||||||| |||||    
T  9266900 tcctcataactccgaactc 9266918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 14240671 - 14240478
Alignment:
Q  27 ttctcacactta---agaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttc 123  Q
    ||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||   || ||||||| | ||||||| |||| || |||||| |    
T  14240671 ttctcacacttagagagaagaagttaatgtgacatgtgtgagttaaccttttacatttgacccaaaagtaaattttgagcaacatatatgtgagatgtcc 14240572  T
Q  124 aatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattg 216  Q
    ||||||||| ||   ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  14240571 aatatacctgatatgttaagattttgaatgaagatgtggtgtcaatctcatttgtggggtttctcttagacaaatataatgatccaactcattg 14240478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 9265297 - 9265457
Alignment:
Q  60 tgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatg 159  Q
    |||||| ||||||||||||||||||| ||||||||||||  |||||| ||||||| |||||| |||||||| ||||| ||||||||||||||||||  ||    
T  9265297 tgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaaggttttgaatgaaactg 9265396  T
Q  160 tggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgtag 219  Q
    | |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||    
T  9265397 tagtgtcaatctcatttatagggtttctcttagacaaatgtaatgatccaactcattgtag 9265457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 6437631 - 6437702
Alignment:
Q  108 tataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg 179  Q
    ||||||| ||||| ||||||||| |||||  |||||||||||| ||| |||||||||||||||||| |||||    
T  6437631 tataagtgagatgatcaatatacataatgctttaaggttttgagtgatgatgtggtgtcaatctcagttgtg 6437702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 10974989 - 10974887
Alignment:
Q  108 tataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggtttctcttagacaaatgtaatgatcc 207  Q
    |||||||||||||  ||||| || ||||| ||||| || |||||||| |||||| |||||||| |||||||| | | ||||||  | ||||| |||||||    
T  10974989 tataagtaagatgaccaatacacttaatgtcttaacgtcttgaatgatgatgtgctgtcaatcacaattgtgtggtgctcttaacctaatgtcatgatcc 10974890  T
Q  208 aac 210  Q
    |||    
T  10974889 aac 10974887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 12125573 - 12125400
Alignment:
Q  46 gttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggt 145  Q
    ||||||||| |||  ||||| ||  ||| ||| ||||||| ||||||| |||| ||||||| |||| || |||||  |||||||||||||| ||| | ||    
T  12125573 gttaatgtgtcattagtgagttacacttctacttttgatgcaagagtatatattgagcaacatatatgtgagatgaccaatatacctaatgtcttcatgt 12125474  T
Q  146 tttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgta 218  Q
    ||   ||  |||||||||||| |||| | |||| |||||||||||   ||||||| |||||||||  |||||||    
T  12125473 ttgagatagagatgtggtgtctatcttacttgtggggtttctcttgttcaaatgtgatgatccaatccattgta 12125400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 50441 - 50489
Alignment:
Q  125 atatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctca 173  Q
    |||||||||||| |||||||||| | ||| |||||||||||||||||||    
T  50441 atatacctaatgtcttaaggtttgggatggagatgtggtgtcaatctca 50489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 20934237 - 20934181
Alignment:
Q  123 caatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg 179  Q
    |||||||||||||| |||||| ||||   |||| ||||||||||||||||| |||||    
T  20934237 caatatacctaatgccttaagattttacgtgaatatgtggtgtcaatctcacttgtg 20934181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 13909790 - 13909975
Alignment:
Q  39 agaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgac 138  Q
    |||| |||||||||||||||||||||| ||||||||||||||||| | || | ||||||| ||||||| ||||||| |||||| |||||||||| ||| |    
T  13909790 agaaaaagttaatgtgacatgtgtgagttaaccttttacatttgacgcaaaaataaatattgagcaacatataagtgagatgtccaatatacctgatgtc 13909889  T
Q  139 ttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgtaggttt 223  Q
    ||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13909890 ttaagattttgaatgaagatgtggtgtcaatctcatttgtggggtttctcttagacaaatgtaatgatccaactcattgtaggttt 13909975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 24180777 - 24180570
Alignment:
Q  23 aagattctcacactta---agaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagat 119  Q
    ||||||||||||||||   ||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||  |||||| ||||| | | ||    
T  24180777 aagattctcacacttatagagatgaagttaatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataactgaaat 24180678  T
Q  120 gttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgta 218  Q
    || |||||||||||||  |||||||||||||||||| |||| ||||||| |||| || | |||||||||||||| |||||||||||||||||||||||||    
T  24180677 gtccaatatacctaatatcttaaggttttgaatgaaaatgtagtgtcaaactcatttttggggtttctcttagataaatgtaatgatccaactcattgta 24180578  T
Q  219 ggtttcct 226  Q
    || |||||    
T  24180577 ggcttcct 24180570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 42756894 - 42756724
Alignment:
Q  46 gttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggt 145  Q
    ||||||||| ||| ||||||  || ||| |||||| |||| |||| || |||| ||||||| ||||||| | |||   ||||||||||| | ||||||||    
T  42756894 gttaatgtgtcatttgtgagtaaaacttctacattggatgcaagactatatattgagcaacatataagttaaatgacaaatatacctaaagtcttaaggt 42756795  T
Q  146 tttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcatt 215  Q
    |||| ||||||||||||||||||||||| || | |||||||||| || ||||||| ||||| ||| |||||    
T  42756794 tttggatgaagatgtggtgtcaatctcacttatggggtttctctaagccaaatgtgatgattcaagtcatt 42756724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 12576916 - 12576822
Alignment:
Q  125 atatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggt-ttctcttagacaaatgtaatgatccaactcattgta 218  Q
    ||||||||| || ||||| ||||||  | || || |||| ||||||||| |||||||  ||||||||| |||||||||||||| |||||||||||    
T  12576916 atatacctattgtcttaaagttttgggtcaaaatatggtctcaatctcatttgtggggattctcttagccaaatgtaatgatctaactcattgta 12576822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 28474868 - 28474803
Alignment:
Q  142 aggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatc 206  Q
    ||||||||| |||||||||||||||||||||| || | ||||||||||| | ||||||| ||||||    
T  28474868 aggttttgagtgaagatgtggtgtcaatctcatttttggggtttctcttggtcaaatgtgatgatc 28474803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 285179 - 285263
Alignment:
Q  127 atacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg-ggtttctcttagacaaatgtaatgatccaac 210  Q
    |||||||||| |||||||||||| || || || ||| ||| |||||| ||||| |||||||||||| ||||||| | ||||||||    
T  285179 atacctaatgtcttaaggttttggatcaaaatatggcgtcgatctcatttgtgaggtttctcttagccaaatgtgacgatccaac 285263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 35648640 - 35648517
Alignment:
Q  56 catgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaa 155  Q
    |||||||||| ||| ||| ||||||  | | || |||| |||| ||||||| ||||||  ||| |  |||||||||||||| |||||| ||||   | ||    
T  35648640 catgtgtgagttaaacttctacattgtaagcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagattttacgtaaa 35648541  T
Q  156 gatgtggtgtcaatctcaattgtg 179  Q
    |||||||||||||||||| |||||    
T  35648540 gatgtggtgtcaatctcacttgtg 35648517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 24181788 - 24181718
Alignment:
Q  108 tataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt 178  Q
    ||||||| ||||| ||||||||| |||||  |||||||||||  ||| ||| |||||||||||||| ||||    
T  24181788 tataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatatggtgtcaatctcagttgt 24181718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 17675275 - 17675227
Alignment:
Q  131 ctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg 179  Q
    ||||||||||||||||| |  ||||||||||||||||| |||| |||||    
T  17675275 ctaatgacttaaggtttagggtgaagatgtggtgtcaaactcacttgtg 17675227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 22681213 - 22681165
Alignment:
Q  125 atatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctca 173  Q
    |||||||||||| |||||||||| |  || |||||||||||||||||||    
T  22681213 atatacctaatgtcttaaggtttagggtggagatgtggtgtcaatctca 22681165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 6202302 - 6202515
Alignment:
Q  23 aagattctcacactta---agaagaagttaatgtgacatgtgt---gaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaa 116  Q
    ||||||||||||||||   |||||||||||||||||| |||||   ||| ||||||||||||||||||| ||||||||||||  |||||| ||||||| |    
T  6202302 aagattctcacacttatagagaagaagttaatgtgacttgtgtagtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtga 6202401  T
Q  117 gatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcatt 215  Q
    ||||| |||||||| ||||| |||||| ||||||||||| |||  |||||||||||| || | ||||||||||||||||||| |||||||||||||||||    
T  6202402 gatgtccaatatacttaatgtcttaagattttgaatgaaaatgcagtgtcaatctcatttatagggtttctcttagacaaatctaatgatccaactcatt 6202501  T
Q  216 gtaggtttcctcgt 229  Q
    ||||| ||||||||    
T  6202502 gtaggcttcctcgt 6202515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 38788222 - 38788041
Alignment:
Q  39 agaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgac 138  Q
    |||| |||||||||||||||||||||| ||||||||||||||||| | || ||||||||| ||||||| ||||| | |||||| |||||||||| ||| |    
T  38788222 agaacaagttaatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataactgagatgtccaatatacctgatgtc 38788123  T
Q  139 ttaaggttttgaatgaagatgtggtgtcaatctcaattgtgg-gtttctcttagacaaatgtaatgatccaactcattgtag 219  Q
    ||||  ||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  38788122 ttaaaattttgaatgaagatgtggtgtcaatctcatttgtggagtttctcttagacaaaagtagtgatccaactcattgtag 38788041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 17510216 - 17510083
Alignment:
Q  58 tgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaaga 157  Q
    |||||||| ||| ||| ||| ||||||| ||||||| |||| || |||| |||  || |||||  |||||||||||||  ||| |||||| | ||| |||    
T  17510216 tgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatcttcaggtttcggatggaga 17510117  T
Q  158 tgtggtgtcaatctcaattgt-gggtttctctta 190  Q
    ||||||||| |||| | |||| ||||||||||||    
T  17510116 tgtggtgtccatcttacttgtggggtttctctta 17510083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 17542998 - 17543131
Alignment:
Q  58 tgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaaga 157  Q
    |||||||| ||| ||| ||| ||||||| ||||||| |||| || |||| |||  || |||||  |||||||||||||  ||| |||||| | ||| |||    
T  17542998 tgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatcttcaggtttcggatggaga 17543097  T
Q  158 tgtggtgtcaatctcaattgt-gggtttctctta 190  Q
    ||||||||| |||| | |||| ||||||||||||    
T  17543098 tgtggtgtccatcttacttgtggggtttctctta 17543131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 42079037 - 42078938
Alignment:
Q  46 gttaatgtgacatgtgtgaggtaacctttta--catttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaag 143  Q
    ||||||||| |||||||||| ||| ||| ||  ||||||||| ||||||| |||| ||||||| | ||||| ||||| |||||||| || ||| ||||||    
T  42079037 gttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatattgagcaacatgtaagtgagatgatcaatatatcttatgtcttaag 42078938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 4110393 - 4110283
Alignment:
Q  90 agtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgg-gtttctct 188  Q
    |||| |||| ||||||| | ||||| ||||| ||||| ||| ||||  |||||||||||  ||| | ||||||||||||||| | |||||| ||||||||    
T  4110393 agtatatattgagcaacatgtaagtgagatgatcaatttacataatatcttaaggttttagatggaaatgtggtgtcaatcttatttgtggagtttctct 4110294  T
Q  189 tagacaaatgt 199  Q
    ||  |||||||    
T  4110293 tattcaaatgt 4110283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 17474732 - 17474599
Alignment:
Q  58 tgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaaga 157  Q
    |||||||| ||| ||| ||| ||||||| ||||||| |||| || |||| |||  || |||||   ||||||||||||  ||| |||||| | ||| |||    
T  17474732 tgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatcttcaggtttcggatggaga 17474633  T
Q  158 tgtggtgtcaatctcaattgt-gggtttctctta 190  Q
    ||||||||| |||| | |||| ||||||||||||    
T  17474632 tgtggtgtccatcttacttgtggggtttctctta 17474599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 17578482 - 17578615
Alignment:
Q  58 tgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaaga 157  Q
    |||||||| ||| ||| ||| ||||||| ||||||| |||| || |||| |||  || |||||   ||||||||||||  ||| |||||| | ||| |||    
T  17578482 tgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatcttcaggtttcggatggaga 17578581  T
Q  158 tgtggtgtcaatctcaattgt-gggtttctctta 190  Q
    ||||||||| |||| | |||| ||||||||||||    
T  17578582 tgtggtgtccatcttacttgtggggtttctctta 17578615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 4109626 - 4109578
Alignment:
Q  123 caatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatct 171  Q
    ||||||||||||||  |||||||||||  |||| |||||||||||||||    
T  4109626 caatatacctaatgttttaaggttttgggtgaaaatgtggtgtcaatct 4109578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 12170 - 12367
Alignment:
Q  27 ttctcacactta---agaagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttc 123  Q
    ||||||||||||   ||||||||||||||||||||||||||| || ||||| | |||||| | || |||| |||| ||||||| ||||||| |||||| |    
T  12170 ttctcacacttagagagaagaagttaatgtgacatgtgtgagttatcctttaaaatttgacgcaaaagtagatattgagcaacatataagtgagatgtcc 12269  T
Q  124 aatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgtagg 220  Q
    ||||||||| ||| |||||| |||||||||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||| ||||||||    
T  12270 aatatacctgatgtcttaagattttgaatgaagatgtggtggcaatctcattcgtggggtttctcttagacaaatgtaatgatccaacttattgtagg 12367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 11650 - 11721
Alignment:
Q  108 tataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg 179  Q
    ||||||| ||||| ||||||||| ||||   |||||||||||  ||| |||||||||||||||||| |||||    
T  11650 tataagtgagatgatcaatatacataatactttaaggttttgggtgatgatgtggtgtcaatctcagttgtg 11721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 6025 - 6087
Alignment:
Q  145 ttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatc 206  Q
    |||||| |||||||||||||||||||| | || | ||||||||||| | ||||||||||||||    
T  6025 ttttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc 6087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 5204 - 5303
Alignment:
Q  123 caatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggtttctcttagacaaatgtaatgatccaactcattgtaggtt 222  Q
    |||||||||||||| ||||   |||||  |||| ||||||||||||| ||| |||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  5204 caatatacctaatgtcttactattttgggtgaatatgtggtgtcaatatcatttgttggtttctcttagtcaaatgtgatgatccaactcattgtaggtt 5303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 1295 - 1436
Alignment:
Q  75 tacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaa 174  Q
    |||||| |||| |||| || |||| | ||||| ||||||| | |||   |||||| |||| | |||||||||||| |||||||||||||||||||||||     
T  1295 tacattggatgcaagactatatattgtgcaacatataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcac 1394  T
Q  175 ttgt-gggtttctcttagacaaatgtaatgatccaactcatt 215  Q
    || | ||||||||||||| ||||||| ||||| ||| |||||    
T  1395 ttatggggtttctcttagccaaatgtgatgattcaagtcatt 1436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 776 - 635
Alignment:
Q  75 tacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaa 174  Q
    |||||| |||| |||| || |||| | ||||| ||||||| | |||   |||||| |||| | |||||||||||| |||||||||||||||||||||||     
T  776 tacattggatgcaagactatatattgtgcaacatataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcac 677  T
Q  175 ttgt-gggtttctcttagacaaatgtaatgatccaactcatt 215  Q
    || | ||||||||||||| ||||||| ||||| ||| |||||    
T  676 ttatggggtttctcttagccaaatgtgatgattcaagtcatt 635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 15272 - 15447
Alignment:
Q  46 gttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggt 145  Q
    ||||||||| || ||||||  ||| ||||||||||  ||||| ||||| |||| ||||||| ||||||| || || | ||||||| ||||| ||||| ||    
T  15272 gttaatgtgtcaagtgtgatttaaacttttacattatatgtatgagtagatattgagcaacatataagtgagctgattaatatacttaatgtcttaaagt 15371  T
Q  146 tttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgtagg 220  Q
    ||||  |  ||||||||||| ||| |||  ||| ||||||||||||| |||||||  ||||| ||| |||||||||    
T  15372 tttgggtttagatgtggtgtgaatttcacatgtggggtttctcttagtcaaatgtggtgatcaaacccattgtagg 15447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 31089616 - 31089445
Alignment:
Q  46 gttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggt 145  Q
    ||||||||| ||| ||| || |||  || |||||| |||| ||||||| || | ||||||| ||||||  ||||| ||||||||||||||| || ||| |    
T  31089616 gttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataagcgagatgatcaatatacctaatgtctgaagtt 31089517  T
Q  146 tttgaa-tgaagatgtggtgtcaatctcaattgtg-ggtttctcttagacaaatgtaatgatccaactcatt 215  Q
    |||    ||| |||||||||||||||||| ||||| ||||||||||||  |||||| |||||||||| ||||    
T  31089516 tttttggtgaggatgtggtgtcaatctcacttgtgaggtttctcttagtaaaatgtgatgatccaacccatt 31089445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 16853684 - 16853755
Alignment:
Q  108 tataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg 179  Q
    ||||||| ||||| ||||||||| |||||  |||||||||||  ||| |||||||||||||||||| |||||    
T  16853684 tataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtggtgtcaatctcagttgtg 16853755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 7844606 - 7844559
Alignment:
Q  132 taatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg 179  Q
    |||||||||||||||| || ||||||||||||||||| |||| |||||    
T  7844606 taatgacttaaggtttagagtgaagatgtggtgtcaaactcacttgtg 7844559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 127618 - 127516
Alignment:
Q  108 tataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggtttctcttagacaaatgtaatgatcc 207  Q
    |||||||||||||  ||||| |||||||| |||||||| |||||||| |||||| |||||||| |||||||| | | ||||||  | ||||| |||||||    
T  127618 tataagtaagatgaccaatacacctaatgtcttaaggtcttgaatgatgatgtgatgtcaatcacaattgtgtggtgctcttaacctaatgtcatgatcc 127519  T
Q  208 aac 210  Q
    |||    
T  127518 aac 127516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 45650 - 45555
Alignment:
Q  124 aatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgta 218  Q
    ||||||||||||| |||||| |||||  ||||||| ||||||  |||||| |||| ||||||||||||  ||||||| ||||| ||||||||||||    
T  45650 aatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctcttaatcaaatgtgatgattcaactcattgta 45555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 44941 - 44875
Alignment:
Q  108 tataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaa 174  Q
    ||||||| |||||  |||||||||||||| |||| ||||||   |||||||||||||||||||||||    
T  44941 tataagtgagatgaacaatatacctaatgccttatggtttttggtgaagatgtggtgtcaatctcaa 44875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 10664 - 10561
Alignment:
Q  94 aatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttaga 192  Q
    ||||| ||||||| ||||||| |||||   || ||||| |||| | |||| ||||| |||||||||| |||||||||||| |||| ||||||||||||||    
T  10664 aatattgagcaacatataagtgagatgacgaacataccaaatgtcctaagtttttggatgaagatgtagtgtcaatctcacttgtagggtttctcttaga 10565  T
Q  193 caaa 196  Q
    ||||    
T  10564 caaa 10561  T

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Target: scaffold0017 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 153137 - 153232
Alignment:
Q  124 aatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgta 218  Q
    ||||||||||||| |||||| |||||  ||||||| ||||||  |||||| |||| ||||||||||||  ||||||| ||||| ||||||||||||    
T  153137 aatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctcttaatcaaatgtgatgattcaactcattgta 153232  T

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Target: scaffold0017; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 153846 - 153912
Alignment:
Q  108 tataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaa 174  Q
    ||||||| |||||  |||||||||||||| |||| ||||||   |||||||||||||||||||||||    
T  153846 tataagtgagatgaacaatatacctaatgccttatggtttttggtgaagatgtggtgtcaatctcaa 153912  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 18089988 - 18089938
Alignment:
Q  123 caatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctca 173  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  18089988 caatatacctaatgccttaaggttttgggtgaagatgtggtgtcaatctca 18089938  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 1599843 - 1599967
Alignment:
Q  41 aagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgactt 140  Q
    |||| ||||||||| ||||||| |  ||| ||| ||||||  ||||||||||| |||| ||||||| ||||| | |||||   |||||| | |||| |||    
T  1599843 aagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataaatgagatgactaatatatccaatgtctt 1599942  T
Q  141 aaggttttgaatgaagatgtggtgt 165  Q
    ||||||||||||  |||||||||||    
T  1599943 aaggttttgaatttagatgtggtgt 1599967  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 10631251 - 10631155
Alignment:
Q  124 aatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg-ggtttctcttagacaaatgtaatgatccaactcattgtag 219  Q
    |||| |||||||| ||||| ||||||||| | ||| || | ||||||  ||||||| |||||||||||||| ||||| ||| |||||||||||||||    
T  10631251 aatacacctaatgccttaatgttttgaataatgatatgttatcaatcataattgtgtggtttctcttagactaatgtgatggtccaactcattgtag 10631155  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 26595958 - 26595850
Alignment:
Q  108 tataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtg-ggtttctcttagacaaatgtaatgatc 206  Q
    |||||||||||||  ||||  |||||||| |||||||||||| |||| |||||| ||||||||  ||||||| ||||| || ||| | ||||| ||||||    
T  26595958 tataagtaagatgaccaatgcacctaatgtcttaaggttttggatgatgatgtgatgtcaatcataattgtgtggtttttcctagcctaatgtcatgatc 26595859  T
Q  207 caactcatt 215  Q
    |||| ||||    
T  26595858 caacccatt 26595850  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 9048702 - 9048798
Alignment:
Q  125 atatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt-gggtttctcttagacaaatgtaatgatccaactcattgtagg 220  Q
    ||||| |||||| |||||| ||||| ||||||||||||||||||||||| ||||    |||||||| | ||||||| ||||||||||  ||||||||    
T  9048702 atatatctaatgccttaagattttggatgaagatgtggtgtcaatctcacttgtataatttctcttcgtcaaatgtgatgatccaacctattgtagg 9048798  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 33013099 - 33013058
Alignment:
Q  179 gggtttctcttagacaaatgtaatgatccaactcattgtagg 220  Q
    ||||||||||||| ||||||| |||||| |||||||||||||    
T  33013099 gggtttctcttagtcaaatgtgatgatcaaactcattgtagg 33013058  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 24541865 - 24541964
Alignment:
Q  123 caatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt--gggtttctcttagacaaatgtaatgatccaactcattgtagg 220  Q
    ||||||||||| ||  ||||||||||| |||||||| || ||| ||| ||| || |  |||||||| |||| ||||| | ||||||||| ||||||||||    
T  24541865 caatatacctactgtgttaaggttttggatgaagatatgatgttaatatcactttttggggtttcttttagtcaaatatgatgatccaattcattgtagg 24541964  T

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Target: scaffold1312 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 8 - 131
Alignment:
Q  56 catgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaa 155  Q
    |||||||||| ||| ||| ||||||  ||| || |||| |||| ||||||| ||||||  ||| |  |||||||||||||| |||||| ||||   | ||    
T  8 catgtgtgagttaaacttctacattgtatgcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagattttacgtaaa 107  T
Q  156 gatgtggtgtcaatctcaattgtg 179  Q
    |||||||||||||||||| |||||    
T  108 gatgtggtgtcaatctcacttgtg 131  T

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Target: scaffold0284 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 7666 - 7539
Alignment:
Q  46 gttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggt 145  Q
    ||||||||| ||  || ||| |||| || |||||| |||| ||||||| || | ||||||| ||||||| |||||  ||| |||||||||| ||||||||    
T  7666 gttaatgtgtcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatataagttagatgaccaaaatacctaatgtcttaaggt 7567  T
Q  146 tttgaatgaagatgtggtgtcaatctca 173  Q
    ||    ||||| ||||||||||||||||    
T  7566 ttcatgtgaagttgtggtgtcaatctca 7539  T

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Target: scaffold1782 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1782
Description:

Target: scaffold1782; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 1277 - 1365
Alignment:
Q  90 agtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgt 178  Q
    |||| |||| ||||||| ||||||  ||| |  |||||||||||||| |||||| ||||   |||||||||||||||||||||| ||||    
T  1277 agtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagattttacgtgaagatgtggtgtcaatctcacttgt 1365  T

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Target: scaffold1933 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1933
Description:

Target: scaffold1933; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 575 - 484
Alignment:
Q  125 atatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtgggt-ttctcttagacaaatgtaatgatccaactcatt 215  Q
    |||||||||||  ||||||||||| | | || || ||  |||||||||| |||||||  ||||||||| |||||||||||||| ||||||||    
T  575 atatacctaatatcttaaggttttaagtcaaaatatgacgtcaatctcatttgtggggattctcttagccaaatgtaatgatctaactcatt 484  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 46349 - 46239
Alignment:
Q  111 aagtaagatgttcaatatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctcaattgtggg-tttctcttagacaaatgtaatgatccaa 209  Q
    ||||||||||  || |||| ||||||  ||||||||||  |||| || ||||||||||| ||| || |||  |||||||||| ||||||| || ||||||    
T  46349 aagtaagatgaccagtatatctaatgtattaaggttttagatgatgaggtggtgtcaatatcacttatggcatttctcttagtcaaatgtgattatccaa 46250  T
Q  210 ctcattgtagg 220  Q
    ||||| |||||    
T  46249 ctcatcgtagg 46239  T

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Target: scaffold0159 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 32549 - 32440
Alignment:
Q  41 aagaagttaatgtgacatgtgtgaggtaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgactt 140  Q
    |||| ||||||||| || ||||||  ||| ||| ||||||  ||||||||||| |||| ||||||| ||||||| |||||   |||||||  || | |||    
T  32549 aagacgttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaaatatactcaaagtctt 32450  T
Q  141 aaggttttga 150  Q
    ||||||||||    
T  32449 aaggttttga 32440  T

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Target: scaffold1743 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 236 - 188
Alignment:
Q  125 atatacctaatgacttaaggttttgaatgaagatgtggtgtcaatctca 173  Q
    ||||| |||||| |||||||||| | ||| |||||||||||||||||||    
T  236 atatatctaatgtcttaaggtttaggatggagatgtggtgtcaatctca 188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 12600 - 12532
Alignment:
Q  75 tacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgttcaatatacctaatgacttaag 143  Q
    |||||| |||| |||||||||||| ||||||| | ||||| ||||| |||||||| || ||| ||||||    
T  12600 tacattagatgcaagagtaaatattgagcaacatgtaagtgagatgatcaatatatcttatgtcttaag 12532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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