View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9449_low_2 (Length: 444)
Name: NF9449_low_2
Description: NF9449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9449_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 761904 - 762316
Alignment:
| Q |
17 |
atgttgtagtaattctcacaatcatgaaacaagtaagatggtctcaacaacctaaaaaaggagcaacccactacnnnnnnngataataccacttatttcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
761904 |
atgttgtagtaattctcacaatcatgaaacaagtaagatggtctcaacaacctaaaaaaggagcaacccactacaaaaaaagataacaccacttatttcg |
762003 |
T |
|
| Q |
117 |
gtacatttcaacagtgtattatttctttgtaattattggttttggaacttcaattcttcaaagatatttgttgcccatatgaggcataataccattagac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
762004 |
gtacatttcaacagtgtattatttctttgtaattattggttttggaacttcaattcttcaaagatatttattgcccatatgaggcataataccattagac |
762103 |
T |
|
| Q |
217 |
acattgcctttcctgtgaacttgattttgtctctttttaagtactcgatttgtattgtatagatatatttgtagaacgtggttgtacaattctatgatat |
316 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
762104 |
acatctcctttcctgtgaacttgattttgtctctttttaagtactcgatttgtattgtatagatatatttgtagaacgtggttgtacaattctatgatat |
762203 |
T |
|
| Q |
317 |
tttccattttgggagttcaaaattccctctttcttaacatccatgtatgatgagttatttataaattttgtttgtatccatttgttgttaattccaagta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
762204 |
tttccattttgggagttcaaaattccctctttcttaacatccatgtatgatgagttatttataaattttgtttgtatccat---ttgttaattcctagta |
762300 |
T |
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| Q |
417 |
ccaatgaaaatgatgt |
432 |
Q |
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||||||||||||||| |
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| T |
762301 |
tcaatgaaaatgatgt |
762316 |
T |
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