View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9449_low_22 (Length: 238)
Name: NF9449_low_22
Description: NF9449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9449_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 30427541 - 30427329
Alignment:
| Q |
18 |
aaacactaccacaagggtaggtgggcattagattaataattagtacaatttaacataaggattgatgaatgaaagaaaatggcacaatcctcaatcgtcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30427541 |
aaacactaccacaagggtaggtgggcattagattaataattagtacaatttaacataaggattgatgaatgaaagaaaatggcacaatcctcaatcgtcg |
30427442 |
T |
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| Q |
118 |
caactctgagccggcactttaaaaggaacattacacccgcactcttcgctcactcctctttcagatctcgttcttcttctctttccttccgccgcaaagc |
217 |
Q |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30427441 |
cgactctgagccggcactttaaaaggaacattatacccgcactcttcgctcactcctctttcagatctcgttcttcttctctttccttccgccgcaaagc |
30427342 |
T |
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| Q |
218 |
ccctctctctgct |
230 |
Q |
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||||||||||||| |
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| T |
30427341 |
ccctctctctgct |
30427329 |
T |
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