View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9449_low_24 (Length: 220)

Name: NF9449_low_24
Description: NF9449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9449_low_24
NF9449_low_24
[»] chr4 (7 HSPs)
chr4 (4-210)||(27451495-27451702)
chr4 (47-210)||(48623903-48624066)
chr4 (9-210)||(23907640-23907841)
chr4 (1-210)||(16001272-16001478)
chr4 (110-189)||(55834038-55834117)
chr4 (113-189)||(55769785-55769861)
chr4 (64-146)||(37250011-37250093)
[»] chr8 (4 HSPs)
chr8 (1-210)||(15216599-15216808)
chr8 (1-189)||(36543916-36544104)
chr8 (5-210)||(13588451-13588655)
chr8 (115-189)||(41148300-41148374)
[»] chr6 (6 HSPs)
chr6 (2-210)||(20428968-20429176)
chr6 (1-210)||(9705544-9705750)
chr6 (1-114)||(5260578-5260691)
chr6 (50-210)||(6081191-6081351)
chr6 (11-186)||(3629059-3629233)
chr6 (109-177)||(17223047-17223115)
[»] chr7 (5 HSPs)
chr7 (9-210)||(32629355-32629556)
chr7 (1-181)||(36650766-36650946)
chr7 (1-210)||(11592433-11592641)
chr7 (5-205)||(24178529-24178730)
chr7 (1-189)||(33351136-33351324)
[»] chr1 (4 HSPs)
chr1 (1-210)||(49348731-49348940)
chr1 (1-210)||(51442094-51442303)
chr1 (7-141)||(35829725-35829859)
chr1 (110-210)||(32405891-32405991)
[»] chr2 (4 HSPs)
chr2 (1-210)||(8179536-8179745)
chr2 (47-138)||(37280923-37281014)
chr2 (47-210)||(11502889-11503051)
chr2 (74-189)||(28409702-28409817)
[»] chr5 (5 HSPs)
chr5 (1-210)||(2076804-2077013)
chr5 (1-210)||(20317734-20317943)
chr5 (10-210)||(1288867-1289067)
chr5 (8-173)||(24177304-24177469)
chr5 (10-189)||(26723-26902)
[»] chr3 (6 HSPs)
chr3 (47-210)||(51449081-51449244)
chr3 (1-189)||(9257865-9258053)
chr3 (86-210)||(38848812-38848936)
chr3 (11-189)||(3368527-3368705)
chr3 (79-141)||(27916396-27916458)
chr3 (62-102)||(48252502-48252542)
[»] scaffold0024 (1 HSPs)
scaffold0024 (93-203)||(74757-74867)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-139)||(13587-13725)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 27451495 - 27451702
Alignment:
Q  4 gtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctt-tatcgccaagacttttccacacttcgataggtatgtt 102  Q
    |||||| || ||||| ||| ||||||||||||||||       |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  27451495 gtctggaatattcttcgtcttcataatctcgttgaatttttttgtgagccacacaattccttatatcgccaagacttttccacacttcgataggtatgtt 27451594  T
Q  103 atccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctct 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||    
T  27451595 atccggcccaacttccttgccattactcatccttttcaatgcttttttcacctcgtgctcttgaattcgacgataatagttatagtttcggccctccgct 27451694  T
Q  203 ctgatgtc 210  Q
    ||||||||    
T  27451695 ctgatgtc 27451702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 48623903 - 48624066
Alignment:
Q  47 gtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgctt 146  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  48623903 gtgagccacacaatccctctatcgccaagactcttccacacttcgataggtatgttgtccggcccaactgccttgccactactcatccttttcaacgctt 48624002  T
Q  147 ttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatgtc 210  Q
     | | |||| |||||||||||| |||||||||||||||||||| ||| ||| ||||| ||||||    
T  48624003 ctataacctcgtgctcttgaatccgacgataatagttatagtttcggtcctcctctccgatgtc 48624066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 23907640 - 23907841
Alignment:
Q  9 gcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccgg 108  Q
    |||||||||| ||||||||||||||||| ||       |||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||| ||| |    
T  23907640 gcattttcttcgtcctcataatctcgttaaaaaggttggtgagccacacaatccctctatcgccaagactcttccacacttcgataggtatgttgtccag 23907739  T
Q  109 cccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatg 208  Q
    |||||||||||||||| || ||||||||||||| |||| | | |||| |||||||||||| ||||| ||||| |||||||| ||| ||| ||||| ||||    
T  23907740 cccaactgccttgccactaatcatccttttcaacgcttctctaacctcgtgctcttgaatccgacggtaataattatagtttcggtcctcctctccgatg 23907839  T
Q  209 tc 210  Q
    ||    
T  23907840 tc 23907841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 16001272 - 16001478
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| || |||||||| ||||||||||||||||| ||       |||| ||||| |||||||  ||| |||||||||||||||||||||| |||||||    
T  16001272 ctcgtccggtattttcttcgtcctcataatctcgttaaaaagtttggtgacccacacaattcct--atctccaagacttttccacacttcgaaaggtatg 16001369  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgct 200  Q
    |  | || | |||||| |||| ||||| ||||||||||||| |||| ||| |||| |||||||||||  ||| |||||||| |||||||   | ||| ||    
T  16001370 tcgtgcgactcaactgtcttgtcattaatcatccttttcaacgcttcttttacctcgtgctcttgaa-ccgatgataatagctatagttttagtcctcct 16001468  T
Q  201 ctctgatgtc 210  Q
    ||||||||||    
T  16001469 ctctgatgtc 16001478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 55834038 - 55834117
Alignment:
Q  110 ccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 189  Q
    ||||||||||||||||||||||||||| ||||  ||| ||| |||| ||  |||||||| |||||||| |||||||||||    
T  55834038 ccaactgccttgccattactcatccttgtcaactcttcttttacctcgtattcttgaatccgacgatagtagttatagtt 55834117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 55769785 - 55769861
Alignment:
Q  113 actgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 189  Q
    |||||||||||||||||||||||| ||||  ||| ||| |||| ||  |||||||| |||||||| |||||||||||    
T  55769785 actgccttgccattactcatccttgtcaactcttcttttacctcgtattcttgaatccgacgatagtagttatagtt 55769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 37250093 - 37250011
Alignment:
Q  64 tttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgctt 146  Q
    ||||||| |||||||||| || | ||| |||| ||||||||  || |||||| |||   ||||||||||||||||||||||||    
T  37250093 tttatcgtcaagactttttcatagttcaatagatatgttatttggtccaacttcctaatcattactcatccttttcaatgctt 37250011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 15216599 - 15216808
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||||||||||||||| ||||||||||||||||||||       |||||||||||||||||| ||| | ||| |||||||||||||| ||||||||||    
T  15216599 ctcgtctggcattttcttcgtcctcataatctcgttgaaaagttttgtgagccacataattcctctatagtcaatacttttccacactttgataggtatg 15216698  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgct 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |||||  ||||||||||||||||||||||| ||| ||    
T  15216699 ttgtccggcccaactgccttgccattactcatccttttcaatgcttctttcatctcgtgctcctgaatctgacgataatagttatagttccggtcctcct 15216798  T
Q  201 ctctgatgtc 210  Q
    ||||||||||    
T  15216799 ctctgatgtc 15216808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 36544104 - 36543916
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| | ||||||||| |||||||||||||| || ||       |||||||||| ||| ||| ||||||||||||| |||||||||| ||||||||||    
T  36544104 ctcgtccgacattttcttcgtcctcataatctctttaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacactttgataggtatg 36544005  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 189  Q
    || ||||||||||||||||||||| ||| |||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||||||    
T  36544004 ttgtccggcccaactgccttgccactacccatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtt 36543916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 13588655 - 13588451
Alignment:
Q  5 tctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttat 104  Q
    |||| ||| ||||||||||| ||||||| ||| ||       |||||||||||||||||| |||| |||| |||||| |||||| | |||||||| || |    
T  13588655 tctgacatcttctttgtccttataatcttgttaaaaagtttagtgagccacataattcctctatccccaa-actttttcacactccaataggtatattgt 13588557  T
Q  105 ccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctct 204  Q
    |  ||||||||| | |||||||| |||| ||||||||||||| ||| |||| |||| ||||||| | |||||| ||||||||||| ||  ||| |||| |    
T  13588556 ctagcccaactgtcatgccattattcatgcttttcaatgcttcttttacctcgtgcgcttgaatcctacgatagtagttatagtttcgatcctcctctat 13588457  T
Q  205 gatgtc 210  Q
    ||||||    
T  13588456 gatgtc 13588451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 41148374 - 41148300
Alignment:
Q  115 tgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 189  Q
    ||||||||||||||||||||||||||| |||||||| ||  |||| ||||||||| ||| ||| |||||||||||    
T  41148374 tgccttgccattactcatccttttcaacgctttttttactatgtgttcttgaattagacaatagtagttatagtt 41148300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 1e-61; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 20428968 - 20429176
Alignment:
Q  2 tcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgt 101  Q
    ||||||||||||||||| ||||||||||||||||||||       |||||||||| |||||||  ||||||| |||||||||||||| ||||||||||||    
T  20428968 tcgtctggcattttcttcgtcctcataatctcgttgaacagttttgtgagccacacaattcctccatcgccatgacttttccacactccgataggtatgt 20429067  T
Q  102 tatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctc 201  Q
    | || ||||||||||||||||||||||||||||||||||| | || |||||| | |||||| ||||| |||||||||||||||||||||||| ||| |||    
T  20429068 tttcgggcccaactgccttgccattactcatccttttcaacggttctttcacttcgtgctcctgaatccgacgataatagttatagttccggtcctcctc 20429167  T
Q  202 tctgatgtc 210  Q
    |||||||||    
T  20429168 tctgatgtc 20429176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 9705750 - 9705544
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| | ||||||||| || |||||||||||||||||       |||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  9705750 ctcgtcggacattttcttcgttctcataatctcgttgaaaagttttgtgagccacacaattcctctatcgccaagacttttccacacttcgataggtatg 9705651  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgct 200  Q
    || ||||  ||||||||||| |||||||   ||| |||||| |||| |||||| | |||||| ||||| |||||||||||||||| ||||||| | | ||    
T  9705650 ttgtccgatccaactgccttaccattac---tccctttcaacgcttctttcacttcgtgctcctgaatccgacgataatagttattgttccggtcttcct 9705554  T
Q  201 ctctgatgtc 210  Q
    ||||||||||    
T  9705553 ctctgatgtc 9705544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 5260578 - 5260691
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  5260578 ctcgtccggcattttctttgtcctcataatctcgttgaaaagttttgtgagccacacaattcctctatcgccaagacttttccacacttcgataggtatg 5260677  T
Q  101 ttatccggcccaac 114  Q
    || |||||||||||    
T  5260678 ttgtccggcccaac 5260691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 6081351 - 6081191
Alignment:
Q  50 agccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttt 149  Q
    ||||||| ||| ||| ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||| |||||||||||||||| ||||       
T  6081351 agccacacaatccctctatcgccaagactcttccacactttgataggtatgttttctggcccaactgccttgccactactcatccttttcaacgcttccc 6081252  T
Q  150 tcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatgtc 210  Q
    | ||||  ||||||||||| ||||||||||| |||||||| ||| ||| || || ||||||    
T  6081251 taacctcatgctcttgaatccgacgataataattatagtttcggtcctcctgtccgatgtc 6081191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 3629233 - 3629059
Alignment:
Q  11 attttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcc 110  Q
    |||||||||||||||||||| || || ||       |||||| ||  ||||| | |||| |||||| ||||||| ||||| | | |||||| ||  ||||    
T  3629233 attttctttgtcctcataatttcattaaaaagtttggtgagctacccaattcatctatctccaagatttttccatacttcaaaaagtatgtcatatggcc 3629134  T
Q  111 caactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttata 186  Q
    |||||| |||||||||| ||||| |||||||  ||| ||| |||||||  | ||||||  ||||||||||||||||    
T  3629133 caactgtcttgccattattcatcattttcaacacttgttt-accttgtattattgaatcagacgataatagttata 3629059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 17223047 - 17223115
Alignment:
Q  109 cccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgata 177  Q
    ||||||| ||||| |||||||||| ||||| |||| || ||| ||||  || |||||||||||||||||    
T  17223047 cccaactaccttgtcattactcattctttttaatgtttcttttacctcttgttcttgaattcgacgata 17223115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 32629556 - 32629355
Alignment:
Q  9 gcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccgg 108  Q
    |||||||||| ||  ||||||||||||||||       |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  32629556 gcattttcttcgttttcataatctcgttgaaaagttttgtgagccacacaattcctctatcgccaagacttttccacacttcgataggtatgttgtccgg 32629457  T
Q  109 cccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatg 208  Q
    |||||||||||| |||||||||||||||||||| |||| |||||||| |||||| ||||| ||||||||||||||||||||  || ||| ||||||||||    
T  32629456 cccaactgccttaccattactcatccttttcaacgcttctttcacctcgtgctcctgaatccgacgataatagttatagttttggtcctcctctctgatg 32629357  T
Q  209 tc 210  Q
    ||    
T  32629356 tc 32629355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 36650946 - 36650766
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| ||||||||||| ||||||||||||||||  ||       |||||||||| ||| ||| ||||||||||||| |||||||||||||||||||||    
T  36650946 ctcgtccggcattttcttcgtcctcataatctcgtcaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacacttcgataggtatg 36650847  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatag 181  Q
    || || |||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||||    
T  36650846 ttgtctggcccaactgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataatag 36650766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11592641 - 11592433
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| ||||||||||| ||||||||| ||||||| ||       ||||| |||| ||| ||| ||||||||||||| |||||||||||| |||| |||    
T  11592641 ctcgtccggcattttcttcgtcctcatagtctcgttaaaaaggtttgtgagtcacacaatccctctatcgccaagactcttccacacttcg-tagggatg 11592543  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgct 200  Q
    || ||||||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||||||| ||| ||| ||    
T  11592542 ttgtccggcccaactgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtttcggtcctcct 11592443  T
Q  201 ctctgatgtc 210  Q
    ||| ||||||    
T  11592442 ctccgatgtc 11592433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 24178529 - 24178730
Alignment:
Q  5 tctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttc-cacacttcgataggtatgtta 103  Q
    |||| ||||||||| |||||||||||||| |||||       |||||||||| ||||||| ||||||||||||||||  |||||||||||| |||||||     
T  24178529 tctgacattttcttcgtcctcataatctcattgaaaagttttgtgagccacacaattcctctatcgccaagacttttttcacacttcgatatgtatgttg 24178628  T
Q  104 tccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctc 203  Q
    | ||||||||||||||| |||||| |||||||||||| ||||| |||||||| |||||  ||||| |||| ||||||||||||| | ||| ||| |||||    
T  24178629 ttcggcccaactgcctttccattagtcatccttttcattgcttctttcacctcgtgctactgaatccgacaataatagttataggttcggtcctcctctc 24178728  T
Q  204 tg 205  Q
    ||    
T  24178729 tg 24178730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 33351136 - 33351324
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| | ||||||||| ||||| ||||||||||| ||       | |||||||| | | ||| ||||||||||||| |||||||||||||||||||||    
T  33351136 ctcgtccgacattttcttcgtccttataatctcgttaaaaaggtttgcgagccacacagtccctctatcgccaagactcttccacacttcgataggtatg 33351235  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 189  Q
    || |||||||||||||||| | || ||| |||||||||||| |||| | | |||| |||||||||||| ||||||||||| ||||||||    
T  33351236 ttgtccggcccaactgcctcgtcactacccatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtt 33351324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 49348731 - 49348940
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| | ||||||||| ||||||||||||||||| ||       |||||||||| ||| ||| ||||||||||||| |||||||||||||||||||||    
T  49348731 ctcgtccgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatccctgtatcgccaagactcttccacacttcgataggtatg 49348830  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgct 200  Q
    || ||||||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||||||| ||| ||| ||    
T  49348831 ttgtccggcccaactgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtttcggtcctcct 49348930  T
Q  201 ctctgatgtc 210  Q
    ||| ||||||    
T  49348931 ctccgatgtc 49348940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 51442094 - 51442303
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| | ||||||||| ||||||||||||||||| ||       |||||||||| ||| ||| ||||||||||||| ||||||| |||||||||||||    
T  51442094 ctcgtccgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacatttcgataggtatg 51442193  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgct 200  Q
    || || |||||| ||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||||||| ||| ||| ||    
T  51442194 ttgtctggcccagctgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtttcggtcctcct 51442293  T
Q  201 ctctgatgtc 210  Q
     || ||||||    
T  51442294 ttccgatgtc 51442303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 35829725 - 35829859
Alignment:
Q  7 tggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatcc 106  Q
    ||||||||||| |||||||||||| ||||| ||       |||||||||  ||| |||||| | |||||||||||||||||||| ||||||||| | ||     
T  35829725 tggcattttctatgtcctcataatttcgttaaaaaatttggtgagccactaaatgcctttaactccaagacttttccacacttcaataggtatgctgtct 35829824  T
Q  107 ggcccaactgccttgccattactcatccttttcaa 141  Q
    ||||||||||| |||| |||||||||| |||||||    
T  35829825 ggcccaactgctttgctattactcatcattttcaa 35829859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 32405891 - 32405991
Alignment:
Q  110 ccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatgt 209  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||   || |||||||| ||| |||| ||||||||||| ||  ||| |||||||||||    
T  32405891 ccaactgccttgccattactcatccttttcaatgcttcttttaccacatgttcttgaatccgatgatagtagttatagtttcgatcctcctctctgatgt 32405990  T
Q  210 c 210  Q
    |    
T  32405991 c 32405991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 8179745 - 8179536
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||||| ||||||||| ||||||||||||||||| ||       |||||||||| ||| ||| |||||| ||||||||||||||||||||||||||||    
T  8179745 ctcgtctgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatccctctatcgctaagacttttccacacttcgataggtatg 8179646  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgct 200  Q
    || ||||||||||||||||||||| || ||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||||||| | | ||| ||    
T  8179645 ttgtccggcccaactgccttgccactaatcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtttcagtcctcct 8179546  T
Q  201 ctctgatgtc 210  Q
    ||| ||||||    
T  8179545 ctccgatgtc 8179536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 37281014 - 37280923
Alignment:
Q  47 gtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatcctttt 138  Q
    |||||||||| ||||||| |||  |||||||||||||||||||| ||| ||||||| || ||||||||||||||| ||||||||||| ||||    
T  37281014 gtgagccacacaattcctctatatccaagacttttccacacttcaatatgtatgttgtctggcccaactgccttgtcattactcatcttttt 37280923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 11502889 - 11503051
Alignment:
Q  47 gtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgctt 146  Q
    ||||||||||  ||||||||||| |||||||||||||||||||| |||| ||| || ||  |||||| ||| ||| |||||||||||| |||||||| ||    
T  11502889 gtgagccacactattcctttatctccaagacttttccacacttcaatagatatcttgtctagcccaattgcattgtcattactcatcc-tttcaatgttt 11502987  T
Q  147 ttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatgtc 210  Q
     ||| |||  ||| ||| ||||  ||| ||| ||||||||||| || ||||  ||||| |||||    
T  11502988 cttttaccccgtgttctagaatctgacaatagtagttatagtttcgaccctcttctctaatgtc 11503051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 28409817 - 28409702
Alignment:
Q  74 agacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgac 173  Q
    ||||||||||||||||  || |||||  | || | | ||| |||||||| |||||| ||| ||||||||| || ||| |||| |||  ||||||| | ||    
T  28409817 agacttttccacacttgaattggtatactgtctgactcaattgccttgcaattactaatcattttcaatgtttcttttacctcgtgtgcttgaatcctac 28409718  T
Q  174 gataatagttatagtt 189  Q
    ||||||||||||||||    
T  28409717 gataatagttatagtt 28409702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2076804 - 2077013
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| | ||||||||| ||||||||||| ||||| ||       |||||||||| ||| ||| ||||||||||||| |||||||||| ||||||||||    
T  2076804 ctcgtccgacattttcttcgtcctcataatgtcgttaaaagggtctgtgagccacacaatccctctatcgccaagactcttccacacttggataggtatg 2076903  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgct 200  Q
    || ||||||||||||||||||||| |||||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||||| | ||| ||| ||    
T  2076904 ttgtccggcccaactgccttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagattcggtcctcct 2077003  T
Q  201 ctctgatgtc 210  Q
    ||| ||||||    
T  2077004 ctccgatgtc 2077013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 20317943 - 20317734
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| | ||||||||| ||||||||||||||||| ||       |||||||||| |||  || ||||||||||||| |||||||||| |||| |||||    
T  20317943 ctcgtccgacattttcttcgtcctcataatctcgttaaaaaggtttgtgagccacacaatctctctatcgccaagactcttccacacttggatatgtatg 20317844  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgct 200  Q
    || |||||||||||| |||| ||| |||||||||||||||| |||| | | ||||||||||||||||| | ||||||||| |||||||| ||| ||| ||    
T  20317843 ttgtccggcccaactaccttaccactactcatccttttcaacgcttctctaaccttgtgctcttgaatccaacgataataattatagtttcggtcctcct 20317744  T
Q  201 ctctgatgtc 210  Q
    ||| ||||||    
T  20317743 ctccgatgtc 20317734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 1288867 - 1289067
Alignment:
Q  10 cattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggc 109  Q
    ||||||||| ||||||||||||||||| ||       |||||||| | ||| ||| |||| |||||||| ||||||||||||||||||||||| ||||||    
T  1288867 cattttcttcgtcctcataatctcgttaaaaaggtttgtgagccatacaatccctctatcaccaagactcttccacacttcgataggtatgttgtccggc 1288966  T
Q  110 ccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatgt 209  Q
    ||||||||| | ||| | |||||||||||||| |||| | | |||| |||||||||||| ||||||||||| |||||||| ||| ||| ||||| |||||    
T  1288967 ccaactgccctaccactcctcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgataataattatagtttcggtcctcctctccgatgt 1289066  T
Q  210 c 210  Q
    |    
T  1289067 c 1289067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 24177469 - 24177304
Alignment:
Q  8 ggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccg 107  Q
    ||||||||||| ||||||||||||| ||| ||       |||||||||| ||| ||| ||||||||||||| |||||||||||||||||||| || ||||    
T  24177469 ggcattttcttcgtcctcataatcttgttaaaaaggtttgtgagccacacaatccctctatcgccaagactcttccacacttcgataggtatattgtccg 24177370  T
Q  108 gcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgac 173  Q
    ||||||||||||||||| |||||||||||||||| |||| | | ||||  ||||||||||| ||||    
T  24177369 gcccaactgccttgccactactcatccttttcaacgcttctctaacctcatgctcttgaatccgac 24177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 26902 - 26723
Alignment:
Q  10 cattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggc 109  Q
    ||||||||||||||||||||||||||| ||       |||||||||| ||||||| |||| ||||||||||||||||||||  |  ||||||| || |||    
T  26902 cattttctttgtcctcataatctcgttaaaaagtttggtgagccacacaattcctctatctccaagacttttccacacttcagtcagtatgttgtctggc 26803  T
Q  110 ccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 189  Q
      ||| |||||||||||||||| |||||||||||||| ||| |||  ||| |||||||| | |||||| |||||| ||||    
T  26802 ttaaccgccttgccattactcacccttttcaatgcttcttttaccccgtgttcttgaatccaacgatagtagttaaagtt 26723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 51449081 - 51449244
Alignment:
Q  47 gtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgctt 146  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||    
T  51449081 gtgagccacacaatccctctatcgccaagactcttccacacttcgataggtatgttgtccggcccaactgccttgccactactcatcctttccaacgctt 51449180  T
Q  147 ttttcaccttgtgctcttgaattcgacgataatagttatagttccggccctgctctctgatgtc 210  Q
     | | |||| |||||||||||| ||||||||||| |||||||| ||| ||| ||||| ||||||    
T  51449181 ctctaacctcgtgctcttgaatccgacgataataattatagtttcggtcctcctctccgatgtc 51449244  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 9258053 - 9257865
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| | ||||||||| ||||||| ||||||||| ||       |||| ||||| ||| ||| |||| ||||||||||||||||   | ||| |||||    
T  9258053 ctcgtccgacattttcttcgtcctcacaatctcgttaaattttttggtgatccacacaatccctctatctccaagacttttccacataacaataagtatg 9257954  T
Q  101 ttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 189  Q
    || || ||||||||||||||||||||||||||||||||||||||||  || || |||||||||||||| |||||||||| |||||||||    
T  9257953 ttgtctggcccaactgccttgccattactcatccttttcaatgcttcctttactttgtgctcttgaatccgacgataatcgttatagtt 9257865  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 38848936 - 38848812
Alignment:
Q  86 acttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttat 185  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||| | | |||| |||||||||||| |||||||| |||||||    
T  38848936 acttcgataggtatgttgtccggcccaactgacttgccactactcatccttttcaacgcttctctaacctcgtgctcttgaatccgacgatagtagttat 38848837  T
Q  186 agttccggccctgctctctgatgtc 210  Q
    |||| ||| ||| ||||| ||||||    
T  38848836 agtttcggtcctcctctccgatgtc 38848812  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 3368705 - 3368527
Alignment:
Q  11 attttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatgttatccggcc 110  Q
    |||||||||||||| ||||||||||| ||       |||||||||| ||||||| || | |||| ||||||  | ||||| || |||||||| || |||     
T  3368705 attttctttgtccttataatctcgtttaaaagttcggtgagccacacaattcctctacctccaatacttttatatacttcaattggtatgttgtctggct 3368606  T
Q  111 caactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagtt 189  Q
    ||||  ||||||||||||||||||||| |||   || |||  | ||||| |||||||| ||||||||||||||||||||    
T  3368605 caacatccttgccattactcatcctttccaacatttattttgctttgtgttcttgaatccgacgataatagttatagtt 3368527  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 27916458 - 27916396
Alignment:
Q  79 tttccacacttcgataggtatgttatccggcccaactgccttgccattactcatccttttcaa 141  Q
    |||||||||||| ||||||||||| || | |||||||||||| ||||||||||||| ||||||    
T  27916458 tttccacacttcaataggtatgttgtctgccccaactgccttcccattactcatccatttcaa 27916396  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 48252542 - 48252502
Alignment:
Q  62 cctttatcgccaagacttttccacacttcgataggtatgtt 102  Q
    |||||||| ||||||| |||||||||||| |||||||||||    
T  48252542 cctttatctccaagacctttccacacttcaataggtatgtt 48252502  T

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Target: scaffold0024 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 74757 - 74867
Alignment:
Q  93 taggtatgttatccggcccaactgccttgccattactcatccttttcaatgcttttttcaccttgtgctcttgaattcgacgataatagttatagttccg 192  Q
    |||||||||| || | |||||||| ||||||||||||||||||||||||  ||| ||| |||||||||||||||||  ||||||| ||||| ||||| ||    
T  74757 taggtatgttgtctgacccaactgtcttgccattactcatccttttcaacacttcttttaccttgtgctcttgaatctgacgatagtagttttagtttcg 74856  T
Q  193 gccctgctctc 203  Q
    | ||| |||||    
T  74857 gtcctcctctc 74867  T

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Target: scaffold0113 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 13587 - 13725
Alignment:
Q  1 ctcgtctggcattttctttgtcctcataatctcgttgaannnnnnngtgagccacataattcctttatcgccaagacttttccacacttcgataggtatg 100  Q
    |||||| | ||||||||| ||||||||||||||||| ||       |||||||||| |||| || ||||||||||||| |||||||||| |||| | |||    
T  13587 ctcgtccgacattttcttcgtcctcataatctcgttaaaaaatattgtgagccacacaatttctctatcgccaagactcttccacactttgataagcatg 13686  T
Q  101 ttatccggcccaactgccttgccattactcatccttttc 139  Q
    || | | ||||||||| |||| || ||||||||||||||    
T  13687 ttgttcagcccaactgtcttgtcactactcatccttttc 13725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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