View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9449_low_3 (Length: 406)
Name: NF9449_low_3
Description: NF9449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9449_low_3 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 39844873 - 39845248
Alignment:
| Q |
16 |
gagacctcatcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39844873 |
gagacctcatcgcatctcttccttcattgtaacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgccaccgaatt |
39844972 |
T |
|
| Q |
116 |
taattattcattgggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttgga |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39844973 |
taattattcattgggaatgttggagt-gggggatctattaataagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttgga |
39845071 |
T |
|
| Q |
216 |
cagcgagaaatgaccggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagatt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39845072 |
aggcgagaaatgaccggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgatgtcttggaggttgctcttaggtagatt |
39845171 |
T |
|
| Q |
316 |
caatgttccggcgtgtatgttttatgaatggagttggtgcctccgagattgtttgttgaggtaagatttggatgtcc |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39845172 |
caatgttccggcgtgtatgttttatgaatggagttggtgcccccgagattgtttgttgaggtaaggtttggttgtcc |
39845248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 22196949 - 22197217
Alignment:
| Q |
28 |
catctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcatt |
127 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||||||| | |||||| || || |||||||||||| ||||| | ||||| | |||| |||| |
|
|
| T |
22196949 |
catcttttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttgtttggatttgaattttataatgcctccgaacctttttatccatt |
22197048 |
T |
|
| Q |
128 |
gggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatg |
227 |
Q |
| |
|
|| | ||||||||| ||||| || ||| |||||| ||||||| || || || ||||| ||||||| | |||||||||||||||| || ||||||| |
|
|
| T |
22197049 |
ggaagtgttggagt-gggggtccttttattaagaaagttcggaacgggttacgaatgatttgggaggccgggatttgggtgatttggaaggctagaaatg |
22197147 |
T |
|
| Q |
228 |
accggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggag |
297 |
Q |
| |
|
|||| ||||||||||||| | ||| || ||||||| | | |||||||||||||||||| |||| ||||| |
|
|
| T |
22197148 |
accgaatttttaataatgttattgctagatgggatgtgctagtggaggaggtaaaagtgttgtcgtggag |
22197217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 297
Target Start/End: Complemental strand, 22240872 - 22240604
Alignment:
| Q |
28 |
catctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcatt |
127 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||||||| | |||||| || || |||||||||||| ||||| | ||||| | |||| |||| |
|
|
| T |
22240872 |
catcttttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttgtttggatttgaattttataatgcctccgaacctttttatccatt |
22240773 |
T |
|
| Q |
128 |
gggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatg |
227 |
Q |
| |
|
|| | ||||||||| ||||| || ||| |||||| ||||||| || || || ||||| ||||||| | |||||||||||||||| || ||||||| |
|
|
| T |
22240772 |
ggaagtgttggagt-gggggtccttttattaagaaagttcggaacgggttacgaatgatttgggaggccgggatttgggtgatttggaaggctagaaatg |
22240674 |
T |
|
| Q |
228 |
accggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggag |
297 |
Q |
| |
|
|||| ||||||||||||| | ||| || ||||||| | | |||||||||||||||||| |||| ||||| |
|
|
| T |
22240673 |
accgaatttttaataatgttattgctagatgggatgtgctagtggaggaggtaaaagtgttgtcgtggag |
22240604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Original strand, 1547597 - 1547974
Alignment:
| Q |
16 |
gagacctcatcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1547597 |
gagacctcatcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgccaccgaatt |
1547696 |
T |
|
| Q |
116 |
taattattcattgggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttgga |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1547697 |
taattattcattgggaatgttggagt-gggggatctattaacaagaaaatttggaagggattgcgtatgatatgggaggtggtaatttgggtgatttgga |
1547795 |
T |
|
| Q |
216 |
cagcgagaaatgaccggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagatt |
315 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
1547796 |
aggcgagaaatggccggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgatgtcttgaaggttgctcttaggtagatt |
1547895 |
T |
|
| Q |
316 |
caatgttccggcgtgtatgttttatgaatggagttggtgcctccgagattgtttgttgaggtaagatttggatgtccat |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
1547896 |
caatgttccggcgtgtatgttttatgaatggagttggtgcccccaagattgtttgttgaggtaaggtttggttgtccat |
1547974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 299
Target Start/End: Complemental strand, 52613054 - 52612790
Alignment:
| Q |
34 |
ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat |
133 |
Q |
| |
|
|||||||||||||| | | |||||||||||||| ||||||||||||||| | |||||||||||| ||||| | || ||||| | ||||||||||| | |
|
|
| T |
52613054 |
ttccttcattgtgatctcggaaggaatgtttggttaaatgtgatgttgtggctcgatttgaattttataatgccgccaaatttgttaattcattgggagt |
52612955 |
T |
|
| Q |
134 |
gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccgga |
233 |
Q |
| |
|
||||||| |||||||| || | ||||| ||||||||||||||| | ||||| ||||||||||| |||||||| | |||| |||||| ||||| || | |
|
|
| T |
52612954 |
gttggag-tgggggattgatacataagaagattcggaagggattgaggatgatttgggaggtggtgatttgggttttgtggaaagcgaggaatgatcgta |
52612856 |
T |
|
| Q |
234 |
tttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggaggt |
299 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| | |||||| |||| |||||| |||| ||||||| |
|
|
| T |
52612855 |
ttttcaataatgagaatgctccatgggatgagcttgtggagaaggtgaaagtgttgtcatggaggt |
52612790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 299
Target Start/End: Complemental strand, 42773994 - 42773724
Alignment:
| Q |
28 |
catctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcatt |
127 |
Q |
| |
|
|||||||| |||||||| || |||| ||||| ||||||||| | |||||| ||||| || ||| ||||||| ||| | || || | ||||||||| |
|
|
| T |
42773994 |
catctctttcttcattgcgatttggcgtggaatatttggttgagtttgatgtcttggttggacttgcattttgttatgcctccaaacctctttattcatt |
42773895 |
T |
|
| Q |
128 |
gggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatg |
227 |
Q |
| |
|
|||| ||||||||| ||||||||| |||| |||||| | || || || ||||||||||| ||||||| || |||||||| ||||||| || ||||||| |
|
|
| T |
42773894 |
gggagtgttggagt-gggggatctcttaagaagaaagtccgtaatggtttgcgtatgatttgggaggccgtgatttgggtaatttggaaggctagaaatg |
42773796 |
T |
|
| Q |
228 |
accggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggaggt |
299 |
Q |
| |
|
| | ||||| || |||| | ||| | |||| |||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
42773795 |
agtgcattttcaacaatgtcatagcgggatgggttgagttagtggaggaggttaaagtgttgtcttggaggt |
42773724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 31524698 - 31524853
Alignment:
| Q |
34 |
ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat |
133 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||| || | ||| |||| ||||||| | ||||||||| | || ||||| |||| |||||||| | |
|
|
| T |
31524698 |
ttccttcattgtgacttggcaaggaatatttggttaaagctaatggagtggctagattttagctttgtaatgcctccaaatttgtttatccattgggagt |
31524797 |
T |
|
| Q |
134 |
gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgg |
190 |
Q |
| |
|
|||||||| || ||| || || ||||||||||||||||| ||| | ||||||||| |
|
|
| T |
31524798 |
gttggagt-ggtggaacttcgaataagaaaattcggaagggcttgagaatgatatgg |
31524853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 158 - 376
Target Start/End: Original strand, 27220356 - 27220574
Alignment:
| Q |
158 |
aagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatgaaaatgcgaggt |
257 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| || |||||| | ||||||| ||| ||||||||||| ||||| ||| |||| || || || |
|
|
| T |
27220356 |
aagaaaatccggaagggtttgcgtatgatatgggaggcggcgatttggataatttggagagcaagaaatgaccgtattttcaatgatgagaacgcattgt |
27220455 |
T |
|
| Q |
258 |
gggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttggtgcct |
357 |
Q |
| |
|
|||| ||||| ||||||||||| || ||| |||||||||| | ||| ||||| ||||| ||| |||| || ||| ||| |||||| |||| |||||| | |
|
|
| T |
27220456 |
gggacgagttagtggaggaggtgaaggtggtgtcttggagatggcttttaggaagatttaatattccagcatgtttgtattatgagtggacttggtgtcc |
27220555 |
T |
|
| Q |
358 |
ccgagattgtttgttgagg |
376 |
Q |
| |
|
||| || |||||| ||||| |
|
|
| T |
27220556 |
ccgggactgtttgatgagg |
27220574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 342
Target Start/End: Complemental strand, 32699697 - 32699516
Alignment:
| Q |
161 |
aaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatgaaaatgcgaggtggg |
260 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||| | || |||||||| ||||||| || ||||| | | |||||||||||||| ||| | ||||||| |
|
|
| T |
32699697 |
aaaatccggaagggatcgcgtatgattcgggagcttgtgatttgggtaatttggaaggcaagaaacgggtgcatttttaataatgagaatacaaggtggg |
32699598 |
T |
|
| Q |
261 |
atgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatga |
342 |
Q |
| |
|
|||| || |||||||||| || ||| ||||||| |||| | | ||||| |||||||| ||||||| |||||||| ||||| |
|
|
| T |
32699597 |
atgacttaatggaggaggttaaggtgatgtcttgtaggtggttgttaggaagattcaacattccggcatgtatgttgtatga |
32699516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 279
Target Start/End: Complemental strand, 5201398 - 5201145
Alignment:
| Q |
25 |
tcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattc |
124 |
Q |
| |
|
|||||| | ||||| ||||| || |||||||| ||| ||||| | || ||||| ||||||| |||||||||||||||||| |||| || ||| | | | |
|
|
| T |
5201398 |
tcgcatattttcctccattgcgatatggctagaaatatttggcttaacttgatggtgtggttggatttgaattttgtaatgccacccaacttattcgtcc |
5201299 |
T |
|
| Q |
125 |
attgggaatgtt-ggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgaga |
223 |
Q |
| |
|
|||||||||||| || | |||| | |||||| |||||||| || ||||| ||| | ||||| ||| | | | ||||||||| ||||||| |||||| |
|
|
| T |
5201298 |
attgggaatgttgggcgatgggtaa--tattaataagaaaatccgtaagggtttgagaatgatttggcaagccgcaatttgggtcatttggaaggcgaga |
5201201 |
T |
|
| Q |
224 |
aatgaccggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggt |
279 |
Q |
| |
|
|||| ||||||||||||| | ||| |||||||||||||| ||||||||||| |
|
|
| T |
5201200 |
aatgggtttatttttaataatgttattgcaaggtgggatgagttagtggaggaggt |
5201145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 245
Target Start/End: Original strand, 1160453 - 1160666
Alignment:
| Q |
31 |
ctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattggg |
130 |
Q |
| |
|
||||||||||||| |||| | || |||||||||||||||||| ||||| ||||| | ||||||| ||||||||| | || ||||| |||||||||||| |
|
|
| T |
1160453 |
ctcttccttcattttgactttgcaaggaatgtttggttgaatttgatgatgtggcttaatttgaactttgtaatgccgccaaatttgtttattcattggg |
1160552 |
T |
|
| Q |
131 |
aatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgacc |
230 |
Q |
| |
|
|||||||||| |||||| | | || || || | ||||| || |||||| |||| ||||||| || |||||||||| | |||| ||||||||| |||| |
|
|
| T |
1160553 |
aatgttggagcgggggga-atttgaataaaaaggtgcggaaaggtttgcgtttgatttgggaggcgggaatttgggtgttatggaaagcgagaaacgacc |
1160651 |
T |
|
| Q |
231 |
ggatttttaataatg |
245 |
Q |
| |
|
|||| || ||||||| |
|
|
| T |
1160652 |
ggatcttcaataatg |
1160666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 379
Target Start/End: Complemental strand, 2688551 - 2688189
Alignment:
| Q |
14 |
cagagacctcatcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaa |
113 |
Q |
| |
|
|||||||| | || ||||| || || |||||||| ||||| ||||||||||||||| | ||||| ||||| |||||| ||||| ||||| | || || |
|
|
| T |
2688551 |
cagagaccacctctcatctttttctccattgtgatttggctcggaatgtttggttgacttcgatgtcttggttggatttgcattttataatgcccccaaa |
2688452 |
T |
|
| Q |
114 |
tttaattattcattgggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttg |
213 |
Q |
| |
|
||| | || |||||||| ||||||||| ||||| | | || |||||||| ||||| || ||||| ||||| ||||||| || ||||||| |||| |
|
|
| T |
2688451 |
cttattcatccattgggagtgttggagt--ggggaccactaaataagaaaatccggaatggcttgcggatgatttgggaggccgtggtttgggtcttttg |
2688354 |
T |
|
| Q |
214 |
gacagcgagaaatgaccggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtaga |
313 |
Q |
| |
|
|| || |||||||| | ||||||||||||| ||||| |||||||| ||| | ||||||||||| |||||| || | ||||||| | | ||| || || |
|
|
| T |
2688353 |
gaatgctagaaatgattgcatttttaataatgttaatgctaggtgggaggaggtagtggaggaggttaaagtgttgacgtggaggtggatgttaagtcga |
2688254 |
T |
|
| Q |
314 |
ttcaatgttccggcgtgtatgttttatgaatggagttggtgcctccgagattgtttgttgaggtaa |
379 |
Q |
| |
|
| ||| |||||| ||| ||| |||||| ||||||||||||| |||||| ||| | ||||||||| |
|
|
| T |
2688253 |
tcgaatactccggcatgtttgtattatgagtggagttggtgcc-ccgagagtgtctcttgaggtaa |
2688189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 36517534 - 36517643
Alignment:
| Q |
269 |
gtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttggtgcctccgagattgtt |
368 |
Q |
| |
|
||||||||||| ||||| |||||||||||| | | ||||| ||||| ||||| ||||| ||||||| |||||| ||| |||||||| ||| || |||| |
|
|
| T |
36517534 |
gtggaggaggtgaaagttttgtcttggaggtgggtgttagggagatttaatgtcccggcatgtatgtattatgagtggtgttggtgctcccgtgagtgtt |
36517633 |
T |
|
| Q |
369 |
tgttgaggta |
378 |
Q |
| |
|
|||||||||| |
|
|
| T |
36517634 |
tgttgaggta |
36517643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 11239475 - 11239351
Alignment:
| Q |
256 |
gtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttggtgc |
355 |
Q |
| |
|
|||||||||||| ||||||||||| || || |||||||||||| | | ||||| ||||| ||||| ||||| || |||| ||| || ||| ||||||| |
|
|
| T |
11239475 |
gtgggatgagttagtggaggaggtgaaggttttgtcttggaggtgggtgttaggaagatttaatgtgccggcttgcatgtattacgagtggtgttggtgt |
11239376 |
T |
|
| Q |
356 |
ctccgagattgtttgttgaggtaag |
380 |
Q |
| |
|
| | | || ||||||||||| |||| |
|
|
| T |
11239375 |
ccctgcgagtgtttgttgagataag |
11239351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 10430270 - 10430418
Alignment:
| Q |
37 |
cttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgtt |
136 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||| | ||| |||||| || ||||| ||| | ||| | || ||||| |||||||||||||||||| |
|
|
| T |
10430270 |
cttcattgcgatttggctaggagtgtttggttgaagcttatggggtggttggacttgaactttatcatgcccccaaatttgtttattcattgggaatgtt |
10430369 |
T |
|
| Q |
137 |
ggagttgggggatctattaacaagaaaattcggaagggattgcgtatgat |
186 |
Q |
| |
|
|||| || ||| || |||||||||||| |||| || ||||||||||| |
|
|
| T |
10430370 |
ggag-tgccggagtcatgaacaagaaaattaggaaaggtttgcgtatgat |
10430418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 9850777 - 9850737
Alignment:
| Q |
107 |
caccgaatttaattattcattgggaatgttggagttggggg |
147 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
9850777 |
caccaaatttatttattcattgggaatgttggagtgggggg |
9850737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 20794294 - 20794561
Alignment:
| Q |
28 |
catctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcatt |
127 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||| | |||||| ||||| |||||||||||| ||||| | |||| | |||| |||| |
|
|
| T |
20794294 |
catctcttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttggttggatttgaattttataatgccttcgaacctttttatccatt |
20794393 |
T |
|
| Q |
128 |
gggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatg |
227 |
Q |
| |
|
|||| |||||||| |||||| || || | |||||| ||||||| | ||||| ||||| | |||||| | |||||||||||||||| || ||||||| |
|
|
| T |
20794394 |
gggagtgttggag-tgggggtccttttcataagaaagttcggaacgagttgcggatgat-ttggaggtcgggatttgggtgatttggaaggctagaaatg |
20794491 |
T |
|
| Q |
228 |
accggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggtaaaagtgctgtcttggag |
297 |
Q |
| |
|
| | | ||||||||||| | ||| || | ||||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
20794492 |
agtgcaattttaataatgctattgctagataggatgagttagtggaggaggttaaagtgatgtcttggag |
20794561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 279
Target Start/End: Original strand, 14459318 - 14459568
Alignment:
| Q |
28 |
catctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcatt |
127 |
Q |
| |
|
||||| || |||||||| ||| |||| | |||||| ||||| || ||||| |||||||||||||||||||| ||| | |||||||| |||| |||| |
|
|
| T |
14459318 |
catctttttcttcattgcgacttggcaaagaatgtgtggttacatttgatgacttggttagatttgaattttgttatgccgccgaatttgtttatccatt |
14459417 |
T |
|
| Q |
128 |
gggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatg |
227 |
Q |
| |
|
||||||||||||| ||||||| ||| | ||||| ||||||||||| ||||| |||||||||||||| | ||||||| |||||| || || |||| |
|
|
| T |
14459418 |
gggaatgttggag-caggggatcaattcataagaagattcggaagggcttgcggatgatatgggaggtagcggtttgggtaatttggcgcgctaggaatg |
14459516 |
T |
|
| Q |
228 |
accggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggt |
279 |
Q |
| |
|
| | ||||||||||||| | ||| |||||||||||| | || |||||||| |
|
|
| T |
14459517 |
agggcatttttaataatgggattgctaggtgggatgagcttgttgaggaggt |
14459568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 339
Target Start/End: Complemental strand, 2031052 - 2030796
Alignment:
| Q |
81 |
gtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcg |
180 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||||| |||| |||||||| |||||| | ||||| || |||| ||||| || |||||||| ||| | |
|
|
| T |
2031052 |
gtggttggatttgaattttgtaatgccacccaatttatttatccattgggagtgttgg-gcggggggtgctcttaataagaagatccggaagggtttgag |
2030954 |
T |
|
| Q |
181 |
tatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatgaaaatgcgaggtgggatgagttggtggaggaggta |
280 |
Q |
| |
|
||||| ||| | || | |||||||||||||||| ||||||||| ||||| ||||| | | || ||||||||||| || |||||||||||| |
|
|
| T |
2030953 |
aatgatttggcaagttgctatttgggtgatttggaaggcgagaaatagggttattttcaataa-gttattgtaaggtgggatgaattagtggaggaggta |
2030855 |
T |
|
| Q |
281 |
aaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgtttta |
339 |
Q |
| |
|
|| ||| | || ||||| | | | ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
2030854 |
aaggtgttatcgtggagatggttgttaggtagatttaatgctccggcgtgtatgtttta |
2030796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 38784786 - 38784946
Alignment:
| Q |
34 |
ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat |
133 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||| | ||| ||||| ||||||||||| ||| | ||| | || ||||| |||||||| || ||| |
|
|
| T |
38784786 |
ttcctacattgtgacttggcgaggaatgtttggcttaatttgatgactaggttagatttggtgtttattatgcctcctaatttgtttattcatcggaaat |
38784885 |
T |
|
| Q |
134 |
gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggt |
195 |
Q |
| |
|
|||||||| ||||||| | | ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38784886 |
gttggagt-gggggatttttcaacaagaaaattcggaaaggattgcgtatgatatgggaggt |
38784946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 246
Target Start/End: Complemental strand, 4636944 - 4636777
Alignment:
| Q |
78 |
gttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgttggagttgggggatctatta-acaagaaaattcggaagggat |
176 |
Q |
| |
|
||||||| | |||||||||||||||||| | || ||||| ||||||||||||| ||||||||| ||||| | |||| | ||||| ||||| ||| || |
|
|
| T |
4636944 |
gttgtggctcgatttgaattttgtaatgccgcctaatttgtttattcattgggagtgttggagtgggggg--ccattacataagaagattcgaaagctat |
4636847 |
T |
|
| Q |
177 |
tgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatga |
246 |
Q |
| |
|
|| | ||||| |||||||||||||||||||| | |||| ||| ||||||| || ||||| |||||||| |
|
|
| T |
4636846 |
tgaggatgatttgggaggtggtaatttgggttttgtggaaagctagaaatgggcgtattttcaataatga |
4636777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 36251064 - 36251155
Alignment:
| Q |
25 |
tcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaattt |
116 |
Q |
| |
|
|||||||| || |||| |||||| ||||| | |||| ||||||| || | |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
36251064 |
tcgcatctttttcttccttgtgatatggcgaagaatatttggttaaacttaatgttgtggttagatttgaattttgtaatgccaccaaattt |
36251155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 55855020 - 55854883
Alignment:
| Q |
158 |
aagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatgaaaatgcgaggt |
257 |
Q |
| |
|
|||||| | |||| ||| ||||||||||| |||||||| || |||| ||| ||||||| ||| ||||||| | | ||||||| |||| |||| |||| |
|
|
| T |
55855020 |
aagaaagtgcggacggggttgcgtatgatttgggaggtagtgattttggttatttggaaagcaagaaatgccagtgtttttaacaatgtgaatgataggt |
55854921 |
T |
|
| Q |
258 |
gggatgagttggtggaggaggtaaaagtgctgtcttgg |
295 |
Q |
| |
|
|||||||| | |||||||||| |||||| |||||||| |
|
|
| T |
55854920 |
gggatgagcttatggaggaggtgaaagtgatgtcttgg |
55854883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 377
Target Start/End: Complemental strand, 7115160 - 7114944
Alignment:
| Q |
161 |
aaaattcggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatgaaaatgcgaggtggg |
260 |
Q |
| |
|
||||| ||||||||| || | |||| |||||||| || |||||||| ||||||| |||||||||| | ||||| || ||||| | || ||||||| |
|
|
| T |
7115160 |
aaaatccggaagggaatgaggttgatttgggaggttgtgatttgggttatttggagggcgagaaatggttgtattttcaacaatgagatagctaggtggg |
7115061 |
T |
|
| Q |
261 |
atgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttggtgcctccg |
360 |
Q |
| |
|
||||||| ||||||||||| || || |||| ||||||| | | ||||| ||||| ||| | ||||| || ||||| || || ||| ||||||| | || |
|
|
| T |
7115060 |
atgagttagtggaggaggtcaaggttatgtcgtggaggtggttattagggagatttaatatcccggcttgcatgttctacgagtggtgttggtgtcctcg |
7114961 |
T |
|
| Q |
361 |
agattgtttgttgaggt |
377 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
7114960 |
ggattgtttgatgaggt |
7114944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 38092991 - 38092895
Alignment:
| Q |
256 |
gtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttgg |
352 |
Q |
| |
|
|||||||||||| ||||||||||| || || | || |||| || | | ||||| ||||| ||| || |||| |||||||||||||||||| ||||| |
|
|
| T |
38092991 |
gtgggatgagttagtggaggaggttaaggttatatcatggaagtggttattagggagatttaatatttcggcatgtatgttttatgaatggtgttgg |
38092895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 52867174 - 52867217
Alignment:
| Q |
200 |
atttgggtgatttggacagcgagaaatgaccggatttttaataa |
243 |
Q |
| |
|
|||||| | ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52867174 |
atttggattatttggaaagcgagaaatgaccggatttttaataa |
52867217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 21977363 - 21977441
Alignment:
| Q |
167 |
cggaagggattgcgtatgatatgggaggtggtaatttgggtgatttggacagcgagaaatgaccggatttttaataatg |
245 |
Q |
| |
|
||||| || ||||||||||| |||||||| | || ||||||||||||| || ||| ||||| || ||||||||||||| |
|
|
| T |
21977363 |
cggaaaggtttgcgtatgatttgggaggttgccatatgggtgatttggaaagtgaggaatgaacgcatttttaataatg |
21977441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 43156 - 43252
Alignment:
| Q |
256 |
gtgggatgagttggtggaggaggtaaaagtgctgtcttggaggttgctcttaggtagattcaatgttccggcgtgtatgttttatgaatggagttgg |
352 |
Q |
| |
|
|||||||||||| ||||| ||||| || || |||||| || || | | ||||| ||||| ||| | ||||| |||||||||||||||||| ||||| |
|
|
| T |
43156 |
gtgggatgagttagtggatgaggttaaggttatgtctttgaagtggttattagggagatttaatatgccggcatgtatgttttatgaatggtgttgg |
43252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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