View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9449_low_9 (Length: 313)
Name: NF9449_low_9
Description: NF9449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9449_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 14550484 - 14550206
Alignment:
| Q |
18 |
acatcactacttcttcaagtatgtgagatatggatcttgagcaatggccaatacatctggtctctcagcctggttatatgttagacaccgccgtataaac |
117 |
Q |
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| T |
14550484 |
acatcactacttcttcatgtatgtgagatatggatcttgagcaatggtcaatacatctggtctctcagcctggttatatgtcagacaccgccgtataaat |
14550385 |
T |
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| Q |
118 |
tcctgacaaatttgtacatgcagtagagataattgtcaggtttcagtgctatttgtaggcagtaagtacaggtattttggatttggttcctctaaactgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14550384 |
tcctgacaaatttgtacatgcagtagagataattgtcaggtttcagtgctatttgtaggcagtaagtacaggtattttggatttggttcctctaaactgt |
14550285 |
T |
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| Q |
218 |
gaggagtattcagagaaaacagtgcggaattataattattgattggaaatcaacagtgaaactttaactacttcatagt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14550284 |
gaggagtattcagagaaaacagtgcggaattataattattgattggaaatcaacagtgaaactttaactacttcatagt |
14550206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 37590140 - 37589859
Alignment:
| Q |
18 |
acatcactacttcttcaagtatgtgagatatggatcttgagcaatggccaatacatctggtctctcagcctggttatatgttagacaccgccgtataaac |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37590140 |
acatcactacttcttcacgtatgtgagatatggatcttgagcaatggtcaatacatctggtctctcagcctggttatatgtcagacaccgccgtataaat |
37590041 |
T |
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| Q |
118 |
tcctgacaaatttgtacatgcagtagagataattgtcaggtttcagtgctatttgtaggcagtaagtacaggtattttggatttggttcctctaaactgt |
217 |
Q |
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| T |
37590040 |
tcctgacaaatttgtacatgcagtagagataattgtcaggtttcagtgatatttgtaggcagtaagtacaggtattttggatttggttcctctaaactgt |
37589941 |
T |
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| Q |
218 |
gaggag---tattcagagaaaacagtgcggaattataattattgattggaaatcaacagtgaaactttaactacttcatagt |
296 |
Q |
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|||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
37589940 |
gaggagttttattcagagaaaacagtgcgaaattatatttcttgattggaaatcaacagtgagactttaacttcttcatagt |
37589859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 37527960 - 37527682
Alignment:
| Q |
18 |
acatcactacttcttcaagtatgtgagatatggatcttgagcaatggccaatacatctggtctctcagcctggttatatgttagacaccgccgtataaac |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37527960 |
acatcactacttcttcacgtatgtgagatatggatcttgagcaatggtcaatacatctggtctctcagcctggttatatgtcagacaccgccgtataaat |
37527861 |
T |
|
| Q |
118 |
tcctgacaaatttgtacatgcagtagagataattgtcaggtttcagtgctatttgtaggcagtaagtacaggtattttggatttggttcctctaaactgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
37527860 |
tcctgacaaatttgtacatgcagtagagataattgtcaggtttcagtgatatttgtaggcagtaagtagaggtattttggatttggttcctataaactgt |
37527761 |
T |
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| Q |
218 |
gaggag---tattcagagaaaacagtgcggaattataattattgattggaaatcaacagtgaaactttaactacttcatagt |
296 |
Q |
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|||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||| |||||||||||| |
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| T |
37527760 |
gaggagttttattcagagaaaacagtgcgaaattatatttcttgattggaaatcaacagtgagactt---ctacttcatagt |
37527682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 37692406 - 37692134
Alignment:
| Q |
18 |
acatcactacttcttcaagtatgtgagatatggatcttgagcaatggccaatacatctggtctctcagcctggttatatgttagacaccgccgtataaac |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37692406 |
acatcactacttcttcacgtatgtgagatatggatcttgagcaatggtcaatacatctggtctctcagcctggttatatgtcagacaccgccgtataaat |
37692307 |
T |
|
| Q |
118 |
tcctgacaaatttgtacatgcagtagagataattgtcaggtttcagtgctatttgtaggcagtaagtacaggtattttggatttggttcctctaaactgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37692306 |
tcctgacaaatttgtacatgcagtagagataattgtcaggtttcagtgatatttgtaggcataaagtacaggtattttggatttggttcctctaaactgt |
37692207 |
T |
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| Q |
218 |
gaggag---tattcagagaaaacagtgcggaattataattattgattggaaatcaacagtgaaactttaacta |
287 |
Q |
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|||||| |||| |||| |||||||||| ||||||| || || |||||||||||||||||| |||||||||| |
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| T |
37692206 |
gaggagttttatttagaggaaacagtgcgaaattatatttcttaattggaaatcaacagtgagactttaacta |
37692134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 37789520 - 37789372
Alignment:
| Q |
14 |
atggacatcactacttcttcaagtatgtgagatatggatcttgagcaatggccaatacatctggtctctcagcctggttatatgttagacaccgccgtat |
113 |
Q |
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||||||||||||| ||||| |||| | ||||| | |||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||||| || |
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| T |
37789520 |
atggacatcactatttctttgagtaagcaagatacgaatcttgggcaatggttaatacatctggtctctcagcctggttgtatgtaagacaccgccgaat |
37789421 |
T |
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| Q |
114 |
aaactcctgacaaatttgtacatgcagtagagataattgtcaggtttca |
162 |
Q |
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||| ||||| |||| ||||||| ||||||||||||||||||||||||| |
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| T |
37789420 |
aaaatcctggcaaaattgtacacacagtagagataattgtcaggtttca |
37789372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 37612790 - 37612642
Alignment:
| Q |
14 |
atggacatcactacttcttcaagtatgtgagatatggatcttgagcaatggccaatacatctggtctctcagcctggttatatgttagacaccgccgtat |
113 |
Q |
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||||||||||||| ||||| |||| | ||||| | |||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||| | || |
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| T |
37612790 |
atggacatcactatttctttgagtaagcaagatacgaatcttgggcaatggttaatacatctggtctctcagcctggttgtatgtaagacaccgcggaat |
37612691 |
T |
|
| Q |
114 |
aaactcctgacaaatttgtacatgcagtagagataattgtcaggtttca |
162 |
Q |
| |
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||| ||||| |||| ||||||| ||||||||||||||||||||||||| |
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| T |
37612690 |
aaaatcctggcaaaattgtacacacagtagagataattgtcaggtttca |
37612642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 37796596 - 37796474
Alignment:
| Q |
40 |
gtgagatatggatcttgagcaatggccaatacatctggtctctcagcctggttatatgttagacaccgccgtataaactcctgacaaatttgtacatgca |
139 |
Q |
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| T |
37796596 |
gtgagatatgagtcttgagcaattgttaatacatctggtctctccgcctggtcatatgtaagacaccgccgaataaaatcctgacaagattgtacacata |
37796497 |
T |
|
| Q |
140 |
gtagagataattgtcaggtttca |
162 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
37796496 |
gtagagataattgtcaggtttca |
37796474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 37620782 - 37620662
Alignment:
| Q |
40 |
gtgagatatggatcttgagcaatggccaatacatctggtctctcagcctggttatatgttagacaccgccgtataaactcctgacaaatttgtacatgca |
139 |
Q |
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|||||||||| ||||||||||| | ||||||||||||||||| ||||||| |||||| ||||||||||| ||||| ||||||||| ||||||| | |
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| T |
37620782 |
gtgagatatgagtcttgagcaattgttaatacatctggtctctccgcctggtcatatgtaagacaccgccgaataaaatcctgacaatattgtaca--ga |
37620685 |
T |
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| Q |
140 |
gtagagataattgtcaggtttca |
162 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
37620684 |
gtatagataattgtcaggtttca |
37620662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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