View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_high_19 (Length: 210)
Name: NF9450_high_19
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 53788681 - 53788868
Alignment:
| Q |
3 |
tgatagaaagactttcaacacaaa-aaccgatcaaattcttattaaatcatgatgtaagataccacctttgtgtcaagatggggagtccggaggatcatc |
101 |
Q |
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| T |
53788681 |
tgatagaaagactttcaacacaaagaaccgatcaaattcttattaaatcatcatgtaagataccacctttgcaaaaagatggggagtccggaggattatc |
53788780 |
T |
|
| Q |
102 |
ctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatctaggcctttttgtatgattcatcaataccata |
189 |
Q |
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| T |
53788781 |
ctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatctaggcctttttgtatgattcatcaataccata |
53788868 |
T |
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