View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_1 (Length: 614)
Name: NF9450_low_1
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 118 - 604
Target Start/End: Complemental strand, 27190240 - 27189756
Alignment:
| Q |
118 |
aaaataattttacacgttaacaaaattaaataacactgtcgctgtaagaatagtataatataatacaataaatttaacgcgtacaaaattaaacatcaat |
217 |
Q |
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| T |
27190240 |
aaaataattttacacgttcatcaaattaaat--cactgtcactgtcagtatagtatagtataatataataagtttaacgcgtacaatattaaacatcaat |
27190143 |
T |
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| Q |
218 |
tcaaataaacctattggcgattttatcaatgtcttccttcttcaacaacaaaggatgatcaagatcagcaacatagttatgcaaattcacagccgcgact |
317 |
Q |
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| T |
27190142 |
tcaaataaacctattggcgatattctcaatgtcttccttcttcaacaacaaaggatgatcaagatcagcaacatagttatgcaaattcacggccgcaacc |
27190043 |
T |
|
| Q |
318 |
tgcggcgccatggcattaagagcatacgcagccgcaccaccagccgcacccaaagcaaccgctcctccaacagcagcatttcgacttccaccgaatttcg |
417 |
Q |
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| T |
27190042 |
tgcggcgccatggcattaagagcatacgcagccgcaccaccagccgcacccaaagcaacagctcctccaacagcagcatttcgacttccaccgaatttgg |
27189943 |
T |
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| Q |
418 |
agccgagatgaaatcccgcggctactgcgccagcaataacaacggcggatgtagcgagacggagtggtggcgatagtttgtcaacgacgttttcgattcc |
517 |
Q |
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| T |
27189942 |
agccgagatgaaatcccgcggctactgcgccggcaataacaacggcggatgtagcgagacggagtggtggtgatagtttgtcgacgacgttttcgattcc |
27189843 |
T |
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| Q |
518 |
ggtgaggtctttgggcggaggaacggaggaggatgatgaagagcgtgggagtgagagtttgaaacagtgtcgtttggtggatgaaga |
604 |
Q |
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| T |
27189842 |
ggtgaggtctttgggcggaggaacggaggaggaggatgatgagcgagggagtgggagtttgaaacggtgtcgtttggtggatgaaga |
27189756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 27190353 - 27190296
Alignment:
| Q |
12 |
atcatcaaccgaaaatatataactcgttactcattatgatataggagattaactgctc |
69 |
Q |
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| T |
27190353 |
atcatcaaccgaaaatatataactcgtaactcataataatataggagattaactgctc |
27190296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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