View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9450_low_10 (Length: 354)

Name: NF9450_low_10
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9450_low_10
NF9450_low_10
[»] chr6 (1 HSPs)
chr6 (50-349)||(34031935-34032234)
[»] chr7 (2 HSPs)
chr7 (54-349)||(19749175-19749470)
chr7 (1-52)||(19748840-19748891)
[»] chr5 (2 HSPs)
chr5 (1-58)||(5076456-5076513)
chr5 (9-53)||(7412720-7412764)
[»] chr3 (3 HSPs)
chr3 (1-51)||(54182318-54182368)
chr3 (257-336)||(51569033-51569112)
chr3 (91-139)||(51569249-51569297)
[»] chr8 (1 HSPs)
chr8 (3-58)||(6224885-6224940)
[»] chr1 (2 HSPs)
chr1 (263-336)||(47973816-47973889)
chr1 (91-139)||(47973625-47973673)
[»] chr4 (1 HSPs)
chr4 (268-326)||(42309673-42309731)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 50 - 349
Target Start/End: Complemental strand, 34032234 - 34031935
Alignment:
Q  50 aaaggcttaaagttaaagaagcttacttaacaaccttgtaaccaattgcctctgatgttttctcaatctcttcctcagaccaatcattagttgtatctcg 149  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |    
T  34032234 aaaggcttaaagttaaagaagcttacttaacagccccgtaaccaattgcctctgatgttctctcaatctcctcctcagaccaatcattagttgtatctag 34032135  T
Q  150 aagaataaagaatatggaatgttacctttctggtgtctagacactaaaacctcaccaaaggaaaataaaataggcacagtcattcatagatcttgatcaa 249  Q
    ||||||| |||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34032134 aagaatatagaatatggaatgttacctttccgatgtctagacactaaaatctcaccaaaggaaaataaaataggcacagtcattcgtagatcttgatcaa 34032035  T
Q  250 gaagaaacaacttgtacattaccacattcaagaagggtagttttacagcgcattttagcttcatcaagaaaatcaactaaacgaacaacctctctgctcc 349  Q
    | ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||    
T  34032034 gcagaaacaacttgtacattaccacgttcaagaagggcagttttacagcgccttttagcttcatcaagcaaatcaaccaaacgaacaacctcactgctcc 34031935  T

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Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 54 - 349
Target Start/End: Original strand, 19749175 - 19749470
Alignment:
Q  54 gcttaaagttaaagaagcttacttaacaaccttgtaaccaattgcctctgatgttttctcaatctcttcctcagaccaatcattagttgtatctcgaaga 153  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||    
T  19749175 gcttaaagttaaagaagcttacttaacagccccgtaaccaattgcctctgatgttttctcaatctcctcctcagaccaatcattagttggatctagaaga 19749274  T
Q  154 ataaagaatatggaatgttacctttctggtgtctagacactaaaacctcaccaaaggaaaataaaataggcacagtcattcatagatcttgatcaagaag 253  Q
    | | |||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19749275 aaatagaatatggaatgttacctttctgttgtctagacactaaatcctgaccaaaggaaaataaaataggcacagtcattcatagatcttgatcaagaag 19749374  T
Q  254 aaacaacttgtacattaccacattcaagaagggtagttttacagcgcattttagcttcatcaagaaaatcaactaaacgaacaacctctctgctcc 349  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||| ||||||||| ||||||||||||| |||||||    
T  19749375 aaacaacttgtacattaccacattcaagaagggaagttttacagcaccttttagcttcctcaaggaaatcaacttaacgaacaacctcactgctcc 19749470  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19748840 - 19748891
Alignment:
Q  1 ccttgttttcaacctcaacattcgcaacgaggtcaacaacttaaatattaaa 52  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19748840 ccttgttttcaacctcaacatttgcaacgaggtcaacaacttaaatattaaa 19748891  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5076513 - 5076456
Alignment:
Q  1 ccttgttttcaacctcaacattcgcaacgaggtcaacaacttaaatattaaaggctta 58  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  5076513 ccttgttctcaacctcaacattcacaacgaggtcaacaacttaaatattaaagcctta 5076456  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 7412720 - 7412764
Alignment:
Q  9 tcaacctcaacattcgcaacgaggtcaacaacttaaatattaaag 53  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  7412720 tcaacctcaacatccgcaacgaggtcaacaacttaaatattaaag 7412764  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 54182318 - 54182368
Alignment:
Q  1 ccttgttttcaacctcaacattcgcaacgaggtcaacaacttaaatattaa 51  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  54182318 ccttgttctcaacctcaacatccgcaacgaggtcaacaacttaaatattaa 54182368  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 51569112 - 51569033
Alignment:
Q  257 caacttgtacattaccacattcaagaagggtagttttacagcgcattttagcttcatcaagaaaatcaactaaacgaaca 336  Q
    ||||| |||| ||||||| ||||||||| | |  |||||||||| |||||||||||||||| ||||||||||| ||||||    
T  51569112 caactggtactttaccacgttcaagaagagcaactttacagcgccttttagcttcatcaagtaaatcaactaatcgaaca 51569033  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 51569297 - 51569249
Alignment:
Q  91 ccaattgcctctgatgttttctcaatctcttcctcagaccaatcattag 139  Q
    |||||||||||||| ||||| |||||||||||||| | |||||| ||||    
T  51569297 ccaattgcctctgaagttttttcaatctcttcctccgtccaatctttag 51569249  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 6224885 - 6224940
Alignment:
Q  3 ttgttttcaacctcaacattcgcaacgaggtcaacaacttaaatattaaaggctta 58  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  6224885 ttgttctcaacctcaacattcgcaatgaggtcaacaacttaaataataaagcctta 6224940  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 336
Target Start/End: Original strand, 47973816 - 47973889
Alignment:
Q  263 gtacattaccacattcaagaagggtagttttacagcgcattttagcttcatcaagaaaatcaactaaacgaaca 336  Q
    |||| ||||||| ||||||||| | |  |||||||||| |||||||||||||||| |||||||| || ||||||    
T  47973816 gtactttaccacgttcaagaagagcaactttacagcgccttttagcttcatcaagtaaatcaaccaatcgaaca 47973889  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 47973625 - 47973673
Alignment:
Q  91 ccaattgcctctgatgttttctcaatctcttcctcagaccaatcattag 139  Q
    ||||||||||| ||||||||||||||||||||||| | |||||| ||||    
T  47973625 ccaattgcctcggatgttttctcaatctcttcctccgtccaatctttag 47973673  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 42309673 - 42309731
Alignment:
Q  268 ttaccacattcaagaagggtagttttacagcgcattttagcttcatcaagaaaatcaac 326  Q
    ||||||| ||||||||| |||  |||||||||  |||||||||||||||| ||||||||    
T  42309673 ttaccacgttcaagaagagtatctttacagcggcttttagcttcatcaagtaaatcaac 42309731  T

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